Evidence map›Paper›PMID 23093934›Full record

ArticlePLoS pathogens2012

Identification of FAM111A as an SV40 host range restriction and adenovirus helper factor.

Debrah A Fine, Orit Rozenblatt-Rosen, Megha Padi, Anna Korkhin, Robert L James, Guillaume Adelmant, Rosa Yoon, Luxuan Guo, Christian Berrios, Ying Zhang and 11 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 1 synthesis or guideline pooled it, 80 citations in OpenAlex.

  1. Expanding the Phenotypic Spectrum of Kenny-Caffey Syndrome.The Journal of clinical endocrinology and metabolism · 2023
    Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 3 institutions in 1 country.

Debrah A FineDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Orit Rozenblatt-Rosen
Megha Padi
Anna Korkhin
Robert L James
Guillaume Adelmant
Rosa Yoon
Luxuan Guo
Christian Berrios
Ying Zhang
Michael A Calderwood
Soundarapandian Velmurgan
Jingwei Cheng
Jarrod A Marto
David E Hill
Michael E Cusick
Marc Vidal
Laurence Florens
Michael P Washburn
Larisa Litovchick
James A DeCaprio
Dana-Farber Cancer Institute · USHarvard University · USStowers Institute for Medical Research · US

Funding

VIRAL ONCOPROTEIN PERTURBATION OF RB/E2F PATHWAYP01CA050661 · NCI · DANA-FARBER CANCER INSTITUTE · PI HOWLEY, PETER M · 1989 to 2013
$35.8M
Genomic Analysis of Network Perturbations in Human DiseaseP50HG004233 · NHGRI · DANA-FARBER CANCER INST · PI VIDAL, MARC · 2007 to 2017
$31.6M
Tumor Cell Biology Training ProgramT32CA009361 · NCI · DANA-FARBER CANCER INSTITUTE · PI GRAY, NATHANAEL SCHIANDER · 1985 to 2015
$8.9M
RB-RELATED PROTEINS IN SV4OT AND E1A TRANSFORMATIONR01CA063113 · NCI · DANA-FARBER CANCER INSTITUTE · PI DECAPRIO, JAMES A. · 1994 to 2018
$5.0M
Interaction Between SV40 Large T and P185 CullinR01CA093804 · NCI · DANA-FARBER CANCER INSTITUTE · PI DECAPRIO, JAMES A. · 2002 to 2011
$3.0M
NCI NIH HHS P01 CA050661NCI NIH HHS P01CA050661NCI NIH HHS R01 CA063113NCI NIH HHS R01 CA093804NCI NIH HHS R01CA63113NCI NIH HHS R01CA93804NCI NIH HHS T32 CA009361NCI NIH HHS T32CA009361NHGRI NIH HHS P50 HG004233NHGRI NIH HHS P50HG004233
6 · The paper itself

Abstract

The small genome of polyomaviruses encodes a limited number of proteins that are highly dependent on interactions with host cell proteins for efficient viral replication. The SV40 large T antigen (LT) contains several discrete functional domains including the LXCXE or RB-binding motif, the DNA binding and helicase domains that contribute to the viral life cycle. In addition, the LT C-terminal region contains the host range and adenovirus helper functions required for lytic infection in certain restrictive cell types. To understand how LT affects the host cell to facilitate viral replication, we expressed full-length or functional domains of LT in cells, identified interacting host proteins and carried out expression profiling. LT perturbed the expression of p53 target genes and subsets of cell-cycle dependent genes regulated by the DREAM and the B-Myb-MuvB complexes. Affinity purification of LT followed by mass spectrometry revealed a specific interaction between the LT C-terminal region and FAM111A, a previously uncharacterized protein. Depletion of FAM111A recapitulated the effects of heterologous expression of the LT C-terminal region, including increased viral gene expression and lytic infection of SV40 host range mutants and adenovirus replication in restrictive cells. FAM111A functions as a host range restriction factor that is specifically targeted by SV40 LT.

Indexed as

AdenoviridaeAnimalsAntigens, Polyomavirus TransformingCell Cycle ProteinsCell LineChlorocebus aethiopsGene Expression ProfilingHost SpecificityHumansKv Channel-Interacting ProteinsProtein Structure, TertiaryReceptors, VirusRepressor ProteinsRNA InterferenceRNA, Small InterferingSimian virus 40Antigens, Polyomavirus TransformingCell Cycle ProteinsFAM111A protein, humanKCNIP3 protein, humanKv Channel-Interacting ProteinsMYBL2 protein, humanReceptors, VirusRepressor ProteinsRNA, Small InterferingTrans-ActivatorsTumor Suppressor Protein p53

Identifiers

PMID23093934
PMCPMC3475652
OpenAlexW2122658744

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.