Evidence map›Paper›PMID 23093592›Full record

ArticleNucleic acids research2013

A minimal bacterial RNase J-based degradosome is associated with translating ribosomes.

Yulia Redko, Sylvie Aubert, Anna Stachowicz, Pascal Lenormand, Abdelkader Namane, Fabien Darfeuille, Marie Thibonnier, Hilde De Reuse

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 62 citations in OpenAlex.

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  14. Riboregulation in the Major Gastric PathogenFrontiers in microbiology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Yulia RedkoDépartement de Microbiologie, Unité Pathogenèse de Helicobacter, Institut Pasteur, 75724 Paris Cedex 15, France.
Sylvie Aubert
Anna Stachowicz
Pascal Lenormand
Abdelkader Namane
Fabien Darfeuille
Marie Thibonnier
Hilde De Reuse
Institut Pasteur · FRInserm · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein complexes directing messenger RNA (mRNA) degradation are present in all kingdoms of life. In Escherichia coli, mRNA degradation is performed by an RNA degradosome organized by the major ribonuclease RNase E. In bacteria lacking RNase E, the existence of a functional RNA degradosome is still an open question. Here, we report that in the bacterial pathogen Helicobacter pylori, RNA degradation is directed by a minimal RNA degradosome consisting of Hp-RNase J and the only DExD-box RNA helicase of H. pylori, RhpA. We show that the protein complex promotes faster degradation of double-stranded RNA in vitro in comparison with Hp-RNase J alone. The ATPase activity of RhpA is stimulated in the presence of Hp-RNase J, demonstrating that the catalytic capacity of both partners is enhanced upon interaction. Remarkably, both proteins are associated with translating ribosomes and not with individual 30S and 50S subunits. Moreover, Hp-RNase J is not recruited to ribosomes to perform rRNA maturation. Together, our findings imply that in H. pylori, the mRNA-degrading machinery is associated with the translation apparatus, a situation till now thought to be restricted to eukaryotes and archaea.

Indexed as

Adenosine TriphosphatasesBacillus subtilisBacterial ProteinsEndoribonucleasesHelicobacter pyloriMembrane Transport ProteinsMultienzyme ComplexesMutationPolyribonucleotide NucleotidyltransferaseProtein BiosynthesisRibosomesRNA, Double-StrandedRNA HelicasesRNA, MessengerRNA, RibosomalAdenosine TriphosphatasesBacterial ProteinsdegradosomeEndoribonucleasesMembrane Transport ProteinsMultienzyme ComplexesPolyribonucleotide NucleotidyltransferaseRNA, Double-StrandedRNA HelicasesRNA, MessengerRNA, RibosomalUreI protein, Helicobacter pylori

Identifiers

PMID23093592
PMCPMC3592473
OpenAlexW2049559321

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.