Evidence map›Paper›PMID 23091042›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

A resurrected mammalian hAT transposable element and a closely related insect element are highly active in human cell culture.

Xianghong Li, Hosam Ewis, Robert H Hice, Nirav Malani, Nicole Parker, Liqin Zhou, Cédric Feschotte, Frederic D Bushman, Peter W Atkinson, Nancy L Craig

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
8.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 65 citations in OpenAlex.

  1. Mining and engineering of activeSynthetic and systems biotechnology · 2027
    Article
  2. Progresses of transposon research inSynthetic and systems biotechnology · 2026
    Review
  3. Article
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  5. Article
  6. Review
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  16. International journal of molecular sciences · 2023
    Article
  17. Review
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Xianghong LiThe Howard Hughes Medical Institute and Department of Molecular Biology and Genetics, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
Hosam Ewis
Robert H Hice
Nirav Malani
Nicole Parker
Liqin Zhou
Cédric Feschotte
Frederic D Bushman
Peter W Atkinson
Nancy L Craig
Johns Hopkins University · USUniversity of California, Riverside · USUniversity of Pennsylvania · USHoward Hughes Medical Institute · USThe University of Texas at Arlington · US

Funding

Favored Sites for HIV Integration in the Human GenomeR01AI052845 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI BUSHMAN, FREDERIC D · 2002 to 2017
$5.6M
HERMES ELEMENT TRANSPOSITION IN MOSQUITOESR01AI045741 · NIAID · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI ATKINSON, PETER WILLIAM · 1999 to 2008
$2.9M
Transposition of Tn7 and HermesR01GM076425 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI CRAIG, NANCY CRAIG · 2006 to 2009
$1.6M
Human DNA transposons: evolutionary history and genomic impactR01GM077582 · NIGMS · UNIVERSITY OF UTAH · PI FESCHOTTE, CEDRIC · 2007 to 2015
$1.4M
Howard Hughes Medical InstituteNIAID NIH HHS AI45741NIAID NIH HHS AI52845NIAID NIH HHS R01 AI045741NIAID NIH HHS R01 AI052845NIGMS NIH HHS GM076425NIGMS NIH HHS GM077582NIGMS NIH HHS R01 GM076425NIGMS NIH HHS R01 GM077582
6 · The paper itself

Abstract

Chromosome structure and function are influenced by transposable elements, which are mobile DNA segments that can move from place to place. hAT elements are a superfamily of DNA cut and paste elements that move by excision and integration. We have characterized two hAT elements, TcBuster and Space Invaders (SPIN), that are members of a recently described subfamily of hAT elements called Buster elements. We show that TcBuster, from the red flour beetle Tribolium castaneum, is highly active in human cells. SPIN elements are currently inactive elements that were recently highly active in multiple vertebrate genomes, and the high level of sequence similarity across widely diverged species and patchy phylogenetic distribution suggest that they may have moved between genomes by horizontal transfer. We have generated an intact version of this element, SPIN(ON), which is highly active in human cells. In vitro analysis of TcBuster and SPIN(ON) shows that no proteins other than transposase are essential for recombination, a property that may contribute to the ability of SPIN to successfully invade multiple organisms. We also analyze the target site preferences of de novo insertions in the human genome of TcBuster and SPIN(ON) and compare them with the preferences of Sleeping Beauty and piggyBac, showing that each superfamily has a distinctive pattern of insertion. The high-frequency transposition of both TcBuster and SPIN(ON) suggests that these transposon systems offer powerful tools for genome engineering. Finally, we describe a Saccharomyces cerevisiae assay for TcBuster that will provide a means for isolation of hyperactive and other interesting classes of transposase mutants.

Indexed as

Amino Acid SequenceAnimalsBase SequenceBinding SitesDNA Transposable ElementsGenes, InsectGenetic EngineeringGene Transfer, HorizontalHeLa CellsHumansMolecular Sequence DataPhylogenySaccharomyces cerevisiaeSequence Homology, Amino AcidSpecies SpecificityTransposasesDNA Transposable ElementsTransposases

Identifiers

PMID23091042
PMCPMC3568352
OpenAlexW2015403852

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.