Evidence map›Paper›PMID 23090996›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Evolutionary analyses of non-genealogical bonds produced by introgressive descent.

Eric Bapteste, Philippe Lopez, Frédéric Bouchard, Fernando Baquero, James O McInerney, Richard M Burian

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

  1. PhyloSystemX: Enhancing the Analysis of Interaction Networks.Methods in molecular biology (Clifton, N.J.) · 2026
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  7. Antibiotic resistance: Time of synthesis in a post-genomic age.Computational and structural biotechnology journal · 2021
    Review
  8. Review
  9. Pan-Genome Analyses ofInternational journal of molecular sciences · 2020
    Article
  10. Article
  11. Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. The role of public goods in planetary evolution.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2017
    Article
  18. Article
  19. Review
  20. Protein networks identify novel symbiogenetic genes resulting from plastid endosymbiosis.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Eric BaptesteUnité Mixte de Recherche 7138 Systématique, Adaptation, Evolution, Université Pierre et Marie Curie, 75005 Paris, France. eric.bapteste@snv
Philippe Lopez
Frédéric Bouchard
Fernando Baquero
James O McInerney
Richard M Burian

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

All evolutionary biologists are familiar with evolutionary units that evolve by vertical descent in a tree-like fashion in single lineages. However, many other kinds of processes contribute to evolutionary diversity. In vertical descent, the genetic material of a particular evolutionary unit is propagated by replication inside its own lineage. In what we call introgressive descent, the genetic material of a particular evolutionary unit propagates into different host structures and is replicated within these host structures. Thus, introgressive descent generates a variety of evolutionary units and leaves recognizable patterns in resemblance networks. We characterize six kinds of evolutionary units, of which five involve mosaic lineages generated by introgressive descent. To facilitate detection of these units in resemblance networks, we introduce terminology based on two notions, P3s (subgraphs of three nodes: A, B, and C) and mosaic P3s, and suggest an apparatus for systematic detection of introgressive descent. Mosaic P3s correspond to a distinct type of evolutionary bond that is orthogonal to the bonds of kinship and genealogy usually examined by evolutionary biologists. We argue that recognition of these evolutionary bonds stimulates radical rethinking of key questions in evolutionary biology (e.g., the relations among evolutionary players in very early phases of evolutionary history, the origin and emergence of novelties, and the production of new lineages). This line of research will expand the study of biological complexity beyond the usual genealogical bonds, revealing additional sources of biodiversity. It provides an important step to a more realistic pluralist treatment of evolutionary complexity.

Indexed as

Evolution, MolecularGenealogy and HeraldryInbreedingPhylogenyBase SequenceDatabases, GeneticGene Regulatory Networks

Identifiers

PMID23090996
PMCPMC3494893

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.