Evidence map›Paper›PMID 23090971›Full record

ArticleMolecular & cellular proteomics : MCP2013

Comparative proteomics of two life cycle stages of stable isotope-labeled Trypanosoma brucei reveals novel components of the parasite's host adaptation machinery.

Falk Butter, Ferdinand Bucerius, Margaux Michel, Zdenka Cicova, Matthias Mann, Christian J Janzen

Abstract readComparative Study
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed.

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  6. Subcellular protein localisation ofWellcome open research · 2023
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  8. Frontiers in molecular biosciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Falk ButterDepartment of Proteomics, Max Planck Institute for Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany.
Ferdinand Bucerius
Margaux Michel
Zdenka Cicova
Matthias Mann
Christian J Janzen

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Trypanosoma brucei developed a sophisticated life cycle to adapt to different host environments. Although developmental differentiation of T. brucei has been the topic of intensive research for decades, the mechanisms responsible for adaptation to different host environments are not well understood. We developed stable isotope labeling by amino acids in cell culture in trypanosomes to compare the proteomes of two different life cycle stages. Quantitative comparison of 4364 protein groups identified many proteins previously not known to be stage-specifically expressed. The identification of stage-specific proteins helps to understand how parasites adapt to different hosts and provides new insights into differences in metabolism, gene regulation, and cell architecture. A DEAD-box RNA helicase, which is highly up-regulated in the bloodstream form of this parasite and which is essential for viability and proper cell cycle progression in this stage is described as an example.

Indexed as

Life Cycle StagesAmino AcidsAmino Acid SequenceAnimalsDEAD-box RNA HelicasesHost-Parasite InteractionsIsotope LabelingMolecular Sequence DataProteomeProteomicsProtozoan ProteinsRNA InterferenceRNA, Small InterferingSequence AlignmentTrypanosoma brucei bruceiAmino AcidsDEAD-box RNA HelicasesProteomeProtozoan ProteinsRNA, Small Interfering

Identifiers

PMID23090971
PMCPMC3536898

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.