Evidence map›Paper›PMID 23089820›Full record

ArticleStatistical applications in genetics and molecular biology2011

Genetic linkage analysis in the presence of germline mosaicism.

Omer Weissbrod, Dan Geiger

Abstract read
In one paragraph

Article in Statistical applications in genetics and molecular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Omer WeissbrodTechnion - Israel Institute of Technology.
Dan Geiger

Funding

Efficient software and algorithms for analyzing markers data on general pedigreeR01HG004175 · NHGRI · UNIVERSITY OF CALIFORNIA-IRVINE · PI DECHTER, RINA · 2007 to 2010
$1.2M
NHGRI NIH HHS 5R01HG004175-03NHGRI NIH HHS R01 HG004175
6 · The paper itself

Abstract

Germline mosaicism is a genetic condition in which some germ cells of an individual contain a mutation. This condition violates the assumptions underlying classic genetic analysis and may lead to failure of such analysis. In this work we extend the statistical model used for genetic linkage analysis in order to incorporate germline mosaicism. We develop a likelihood ratio test for detecting whether a genetic trait has been introduced into a pedigree by germline mosaicism. We analyze the statistical properties of this test and evaluate its performance via computer simulations. We demonstrate that genetic linkage analysis has high power to identify linkage in the presence of germline mosaicism when our extended model is used. We further use this extended model to provide solid statistical evidence that the MDN syndrome studied by Genzer-Nir et al. has been introduced by germline mosaicism.

Indexed as

Genetic LinkageGenetic Predisposition to DiseaseGerm-Line MutationAllelesComputational BiologyComputer SimulationGenetic Diseases, InbornGenetic LociHumansModels, GeneticPedigreePolymorphism, Single NucleotideReproducibility of ResultsSensitivity and Specificity

Identifiers

PMID23089820
PMCPMC3215430

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.