Evidence map›Paper›PMID 23088992›Full record

ArticleThe Journal of urology2012

Exploration of gene-environment interactions, maternal effects and parent of origin effects in the etiology of hypospadias.

Loes F M van der Zanden, Tessel E Galesloot, Wout F J Feitz, Marijn M Brouwers, Min Shi, Nine V A M Knoers, Barbara Franke, Nel Roeleveld, Iris A L M van Rooij

Open access · greenAbstract readComparative Study
In one paragraph

Article in The Journal of urology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 33 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Anorectal malformations.Nature reviews. Disease primers · 2024
    Review
  5. Genetic and environmental factors driving congenital solitary functioning kidney.Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association · 2024
    Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Joint effects of genetic variants and residential proximity to pesticide applications on hypospadias risk.Birth defects research. Part A, Clinical and molecular teratology · 2016
    Article
  15. Article
  16. Article
  17. Possible fetal determinants of male infertility.Nature reviews. Endocrinology · 2014
    Review
  18. Genetics of human congenital urinary bladder disease.Pediatric nephrology (Berlin, Germany) · 2014
    Review
  19. Intrauterine growth restriction and hypospadias: is there a connection?International journal of pediatric endocrinology · 2014
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Loes F M van der ZandenDepartment of Epidemiology, Radboud University Nijmegen Medical Center, Nijmegen, The Netherlands. L.vanderZanden@ebh.umcn.nl
Tessel E Galesloot
Wout F J Feitz
Marijn M Brouwers
Min Shi
Nine V A M Knoers
Barbara Franke
Nel Roeleveld
Iris A L M van Rooij
Radboud University Nijmegen · NLRadboud University Medical Center · NLNational Institute of Environmental Health Sciences · USUniversity Medical Center Utrecht · NL

Funding

Intramural NIH HHS Z99 ES999999
6 · The paper itself

Abstract

purposeHypospadias is a common congenital malformation of the male external genitalia. Association studies for single nucleotide polymorphisms in genes encoding steroid 5alpha-reductase, estrogen receptors 1 and 2, and activating transcription factor 3 have been equivocal. We examined whether nonreplication of findings for 4 single nucleotide polymorphisms in these genes could be due to interaction with environmental exposures. MATERIALS AND

methodsWe genotyped 712 Dutch hypospadias case-parent triads for the 4 single nucleotide polymorphisms, used questionnaire information to determine exposures and performed association tests using the log-linear approach. We studied gene-environment interactions for the 4 single nucleotide polymorphisms with exposure to estrogens, cytokines or cigarette smoke, multiple birth, being born small for gestational age, maternal hypertension or preeclampsia, high body mass index or primiparity. In addition, the presence of maternal genetic and parent of origin effects was tested.

resultsGene-environment interactions were identified for rs523349 in SRD5A2 with estrogen exposure and maternal hypertension or preeclampsia, as well as for rs11119982 in ATF3 with exposure to cytokines. Both single nucleotide polymorphisms seemed to influence hypospadias risk only in exposed cases. For rs6932902 in ESR1 only maternally derived alleles appeared to increase hypospadias risk in offspring.

conclusionsInteractions between genetic and environmental factors may help to explain nonreplication in genetic studies of hypospadias.

Indexed as

Gene-Environment InteractionGenetic Predisposition to DiseasePolymorphism, Single NucleotideActivating Transcription Factor 3Cohort StudiesDatabases, FactualEstrogen Receptor alphaFemaleGenotypeGestational AgeHumansHypospadiasInfant, NewbornLinear ModelsMaleMaternal ExposureActivating Transcription Factor 3ATF3 protein, humanESR1 protein, humanEstrogen Receptor alphaRNA, Messenger

Identifiers

PMID23088992
PMCPMC3602843
OpenAlexW2018897606

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.