Evidence map›Paper›PMID 23087602›Full record

ArticleFrontiers in neuroscience2012

Evidence for transcriptional factor dysregulation in the dorsal raphe nucleus of patients with major depressive disorder.

Ilan A Kerman, René Bernard, William E Bunney, Edward G Jones, Alan F Schatzberg, Richard M Myers, Jack D Barchas, Huda Akil, Stanley J Watson, Robert C Thompson

Open access · goldAbstract read
In one paragraph

Article in Frontiers in neuroscience, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 58 citations in OpenAlex.

  1. Enzymology of the metazoan tRNA ligase complex: a lifetime in cycles.Cellular and molecular life sciences : CMLS · 2026
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  3. Regulation ofInternational journal of molecular sciences · 2025
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  16. LSD1 modulates stress-evoked transcription of immediate early genes and emotional behavior.Proceedings of the National Academy of Sciences of the United States of America · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 8 institutions in 2 countries.

Ilan A KermanDepartment of Psychiatry and Behavioral Neurobiology, University of Alabama at Birmingham Birmingham, AL, USA.
René Bernard
William E Bunney
Edward G Jones
Alan F Schatzberg
Richard M Myers
Jack D Barchas
Huda Akil
Stanley J Watson
Robert C Thompson
University of Michigan–Ann Arbor · USCharité - Universitätsmedizin Berlin · DECornell University · USHudsonAlpha Institute for Biotechnology · USPalo Alto University · USUniversity of Alabama at Birmingham · USUniversity of California, Davis · USUniversity of California, Irvine · US

Funding

Project 5: High-Throughput Analysis of Gene RegulationP50MH060398 · NIMH · UNIVERSITY OF CALIFORNIA-IRVINE · PI BUNNEY, WILLIAM E · 1999 to 2008
$12.7M
Neural Substrates of Somatomotor and Autonomic Disturbances in Major DepressionR00MH081927 · NIMH · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KERMAN, ILAN A · 2011 to 2013
$719k
NIMH NIH HHS P50 MH060398NIMH NIH HHS R00 MH081927
6 · The paper itself

Abstract

Extensive evidence implicates dysfunction in serotonin (5-HT) signaling in the etiology of major depressive disorder (MDD). Dorsal raphe nucleus (DR) is a major source of serotonin in the brain, and previous studies have reported within it alterations in 5-HT-related gene expression, protein levels, receptor binding, and morphological organization in mood disorders. In the present study, we utilized in situ hybridization-guided laser capture microdissection to harvest tissue samples from the middle-caudal subregion of the human DR post-mortem from MDD patients and from psychiatrically normal comparison subjects. Extracted RNA was prepared for gene expression profiling, and subsequent confirmation of select targets with quantitative real-time PCR. Our data indicate expression changes in functional gene families that regulate: (1) cellular stress and energy balance, (2) intracellular signaling and transcriptional regulation, and (3) cell proliferation and connectivity. The greatest changes in expression were observed among transcriptional regulators, including downregulation in the expression of TOB1, EGR1, and NR4A2 and their downstream targets. Previous studies have implicated these gene products in the regulation of functional domains impacted by MDD, including cognitive function, affective regulation, and emotional memory formation. These observations indicate altered function of several transcriptional regulators and their downstream targets, which may lead to the dysregulation of multiple cellular functions that contribute to the pathophysiology of MDD. Future studies will require single cell analyses in the DR to determine potential impact of these changes on its cellular functions and related circuits.

Indexed as

depressiongene expressionlaser capture microdissectionmicroarraypostmortemreal-time PCRserotonin

Identifiers

PMID23087602
PMCPMC3475304
OpenAlexW2111842792

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.