ArticleThe Journal of heredity
Pedimap: software for the visualization of genetic and phenotypic data in pedigrees.
Article in The Journal of heredity. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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Who cites it
28 citing papers in PubMed.
- Why we thrive beneath a northern sky - genomic signals of selection in apple for adaptation to northern Sweden.Heredity · 2024Article
- PERSEUS: an interactive and intuitive web-based tool for pedigree visualization.Bioinformatics (Oxford, England) · 2024Article
- Genetic Diversity and Pedigree Analysis of Red Currant Germplasm.Plants (Basel, Switzerland) · 2022Article
- Identification of QTLs for Reduced Susceptibility to Rose Rosette Disease in Diploid Roses.Pathogens (Basel, Switzerland) · 2022Article
- Social network analysis of the genealogy of strawberry: retracing the wild roots of heirloom and modern cultivars.G3 (Bethesda, Md.) · 2021Article
- Fire blight QTL analysis in a multi-family apple population identifies a reduced-susceptibility allele in 'Honeycrisp'.Horticulture research · 2021Article
- Prospects forFrontiers in plant science · 2021Review
- RosBREED: bridging the chasm between discovery and application to enable DNA-informed breeding in rosaceous crops.Horticulture research · 2020Review
- Application of Pedimap: a pedigree visualization tool to facilitate the decisioning of rice breeding in Sri Lanka.Scientific reports · 2020Article
- A genome-wide comparative analysis of bZIP transcription factors inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2020Article
- Using whole-genome SNP data to reconstruct a large multi-generation pedigree in apple germplasm.BMC plant biology · 2020Article
- FaRCa1: a major subgenome-specific locus conferring resistance to Colletotrichum acutatum in strawberry.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- Lineage: Visualizing Multivariate Clinical Data in Genealogy Graphs.IEEE transactions on visualization and computer graphics · 2019Article
- A large-scale pedigree resource of wheat reveals evidence for adaptation and selection by breeders.PLoS biology · 2019Article
- Genetic Dissection of Bloom Time in Low Chilling Sweet Cherry (Frontiers in plant science · 2019Article
- Deciphering the genetic control of fruit texture in apple by multiple family-based analysis and genome-wide association.Journal of experimental botany · 2017Article
- Clarifying sub-genomic positions of QTLs for flowering habit and fruit quality in U.S. strawberry (Horticulture research · 2017Article
- Genomic dissection of a 'Fuji' apple cultivar: re-sequencing, SNP marker development, definition of haplotypes, and QTL detection.Breeding science · 2016Article
- Article
- Accuracy and responses of genomic selection on key traits in apple breeding.Horticulture research · 2015Article
Corrections and comments
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Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Pedimap is a user-friendly software tool for visualizing phenotypic and genotypic data for related individuals linked in pedigrees. Genetic data can include marker scores, Identity-by-Descent probabilities, and marker linkage map positions, allowing the visualization of haplotypes through lineages. The pedigrees can accommodate all types of inheritance, including selfing, cloning, and repeated backcrossing, and all ploidy levels are supported. Visual association of the genetic data with phenotypic data simplifies the exploration of large data sets, thereby improving breeding decision making. Data are imported from text files; in addition data exchange with other software packages (FlexQTL(TM) and GenomeStudio(TM)) is possible. Instructions for use and an executable version compatible with the Windows platform are available for free from http://www.plantbreeding.wur.nl/UK/software_pedimap.html.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.