Evidence map›Paper›PMID 23086475›Full record

ArticleNature medicine2012

Evolution of an HIV glycan-dependent broadly neutralizing antibody epitope through immune escape.

Penny L Moore, Elin S Gray, C Kurt Wibmer, Jinal N Bhiman, Molati Nonyane, Daniel J Sheward, Tandile Hermanus, Shringkhala Bajimaya, Nancy L Tumba, Melissa-Rose Abrahams and 10 more

Open access · greenAbstract read
In one paragraph

Article in Nature medicine, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 211 papers.

0numbers the graph read from it
0cells of the map it votes in
211citing papers in PubMed
14.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

211 citing papers in PubMed, 295 citations in OpenAlex.

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151 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors at 7 institutions in 2 countries.

Penny L MooreCentre for HIV and STI, National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg, South Africa.
Elin S Gray
C Kurt Wibmer
Jinal N Bhiman
Molati Nonyane
Daniel J Sheward
Tandile Hermanus
Shringkhala Bajimaya
Nancy L Tumba
Melissa-Rose Abrahams
Bronwen E Lambson
Nthabeleng Ranchobe
Lihua Ping
Nobubelo Ngandu
Quarraisha Abdool Karim
Salim S Abdool Karim
Ronald I Swanstrom
Michael S Seaman
Carolyn Williamson
Lynn Morris
National Health Laboratory Service · ZAUniversity of Cape Town · ZAUniversity of KwaZulu-Natal · ZAUniversity of North Carolina at Chapel Hill · USBeth Israel Deaconess Medical Center · USHarvard University · USUniversity of the Witwatersrand · ZA

Funding

Virology, Immunology, and Microbiology CoreP30AI050410 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DAVID M. MARGOLIS · 2001 to 2026
$76.9M
The Viral Set Point in HIV-1 Subtype C InfectionU19AI051794 · NIAID · UNIVERSITY OF KWAZULU-NATAL · PI ABDOOL KARIM, SALIM S · 2002 to 2007
$22.5M
Viral Immunology CoreP01AI088610 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI PINTER, ABRAHAM · 2010 to 2014
$15.3M
TUBERCULOSIS SUPPLEMENTD43TW000231 · FIC · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI ABDOOL KARIM, QUARRAISHA · 1993 to 2014
$13.1M
FIC NIH HHS 5 D43 TW000231FIC NIH HHS D43 TW000231NIAID NIH HHS AI088610NIAID NIH HHS P01 AI088610NIAID NIH HHS P30 AI050410NIAID NIH HHS U19 AI051794NIAID NIH HHS U19 AI51794Wellcome Trust 089933Wellcome Trust 089933/Z/09/Z
6 · The paper itself

Abstract

Neutralizing antibodies are likely to play a crucial part in a preventative HIV-1 vaccine. Although efforts to elicit broadly cross-neutralizing (BCN) antibodies by vaccination have been unsuccessful, a minority of individuals naturally develop these antibodies after many years of infection. How such antibodies arise, and the role of viral evolution in shaping these responses, is unknown. Here we show, in two HIV-1-infected individuals who developed BCN antibodies targeting the glycan at Asn332 on the gp120 envelope, that this glycan was absent on the initial infecting virus. However, this BCN epitope evolved within 6 months, through immune escape from earlier strain-specific antibodies that resulted in a shift of a glycan to position 332. Both viruses that lacked the glycan at amino acid 332 were resistant to the Asn332-dependent BCN monoclonal antibody PGT128 (ref. 8), whereas escaped variants that acquired this glycan were sensitive. Analysis of large sequence and neutralization data sets showed the 332 glycan to be significantly under-represented in transmitted subtype C viruses compared to chronic viruses, with the absence of this glycan corresponding with resistance to PGT128. These findings highlight the dynamic interplay between early antibodies and viral escape in driving the evolution of conserved BCN antibody epitopes.

Indexed as

Antibodies, NeutralizingEpitopesHIVHIV-1PolysaccharidesAIDS VaccinesAmino Acid SequenceAntibody SpecificityEvolution, MolecularFemaleGenome, ViralHIV Envelope Protein gp120HIV InfectionsHIV SeropositivityHumansMolecular Sequence DataAIDS VaccinesAntibodies, NeutralizingEpitopesHIV Envelope Protein gp120Polysaccharides

Identifiers

PMID23086475
PMCPMC3494733
OpenAlexW2048787904

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.