Evidence map›Paper›PMID 23085319›Full record

ArticleGene2014

Exploiting genes and functional diversity of chlorogenic acid and luteolin biosyntheses in Lonicera japonica and their substitutes.

Yuan Yuan, Zhouyong Wang, Chao Jiang, Xumin Wang, Luqi Huang

Open access · greenAbstract read
In one paragraph

Article in Gene, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 73 citations in OpenAlex.

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  12. Anti-inflammatory effects ofInternational journal of medical sciences · 2021
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  14. Lonicerae japonicae flos and Lonicerae flos: a systematic review of ethnopharmacology, phytochemistry and pharmacology.Phytochemistry reviews : proceedings of the Phytochemical Society of Europe · 2020
    Review
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Yuan YuanInstitute of Chinese Materia Medica, Academy of Chinese Medical Sciences, Beijing 100700, China.
Zhouyong WangInstitute of Chinese Materia Medica, Academy of Chinese Medical Sciences, Beijing 100700, China.
Chao JiangInstitute of Chinese Materia Medica, Academy of Chinese Medical Sciences, Beijing 100700, China.
Xumin WangCAS Key Laboratory of Genome Sciences and Information, Beijing, 100029, China.
Luqi HuangInstitute of Chinese Materia Medica, Academy of Chinese Medical Sciences, Beijing 100700, China. Electronic address: huangluqi@163.net.
Institute of Chinese Materia MedicaChinese Academy of Medical Sciences & Peking Union Medical College · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chlorogenic acids (CGAs) and luteolin are active compounds in Lonicera japonica, a plant of high medicinal value in traditional Chinese medicine. This study provides a comprehensive overview of gene families involved in chlorogenic acid and luteolin biosynthesis in L. japonica, as well as its substitutes Lonicera hypoglauca and Lonicera macranthoides. The gene sequence feature and gene expression patterns in various tissues and buds of the species were characterized. Bioinformatics analysis revealed that 14 chlorogenic acid and luteolin biosynthesis-related genes were identified from the L. japonica transcriptome assembly. Phylogenetic analyses suggested that the function of individual gene could be differentiation and induce active compound diversity. Their orthologous genes were also recognized in L. hypoglauca and L. macranthoides genomic datasets, except for LHCHS1 and LMC4H2. The expression patterns of these genes are different in the tissues of L. japonica, L. hypoglauca and L. macranthoides. Results also showed that CGAs were controlled in the first step of biosynthesis, whereas both steps controlled luteolin in the bud of L. japonica. The expression of LJFNS2 exhibited positive correlation with luteolin levels in L. japonica. This study provides significant information for understanding the functional diversity of gene families involved in chlorogenic acid and the luteolin biosynthesis, active compound diversity of L. japonica and its substitutes, and the different usages of the three species.

Indexed as

Genes, PlantChlorogenic AcidComputational BiologyDNA, ComplementaryGene ExpressionLoniceraLuteolinMedicine, Chinese TraditionalPhylogenyPlant LeavesTranscriptomeChlorogenic AcidDNA, ComplementaryLuteolincDNAChlorogenic acidcomplementary DNAdegenerate primerdeoxyribonucleic acidsDNADPGene expressionHoneysuckleLuteolinopen reading frameORFOthologous genesPCRpolymerase chain reactionRACEraid amplification of cDNA endsribonucleic acidsRNASelaginella pulvintaSpTPPTPStrehalose-6-phosphate phosphatasetrehalose-6-phosphate synthasetrehalose-6-phosphate synthase gene

Identifiers

PMID23085319
PMCPMC7138419
OpenAlexW2165678292

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.