Evidence map›Paper›PMID 23085077›Full record

ArticleStructure (London, England : 1993)2012

RecA-binding pilE G4 sequence essential for pilin antigenic variation forms monomeric and 5' end-stacked dimeric parallel G-quadruplexes.

Vitaly Kuryavyi, Laty A Cahoon, H Steven Seifert, Dinshaw J Patel

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
7.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 89 citations in OpenAlex.

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  15. Altering theBiochemistry · 2020
    Article
  16. Article
  17. Article
  18. Antigenic Variation inJournal of bacteriology · 2020
    Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Vitaly KuryavyiStructural Biology Program, Memorial Sloan-Kettering Cancer Center, New York, NY, 10065, USA. v.kuryavyi@gmail.com
Laty A Cahoon
H Steven Seifert
Dinshaw J Patel
Memorial Sloan Kettering Cancer Center · USNorthwestern University · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
CELLULAR &MOLECULAR BASIS OF DISEASE TRAINING PROGRAMT32GM008061 · NIGMS · NORTHWESTERN UNIVERSITY · PI CARTHEW, RICHARD W. · 1985 to 2022
$17.1M
Mechanisms of Gonococcal Pilin Antigenic/Phase VariationR37AI033493 · NIAID · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Hank S. SEIFERT · 2003 to 2026
$10.1M
900 MHz NMR Spectrometer for Structural BiologyP41GM066354 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI COWBURN, DAVID · 2002 to 2006
$4.7M
MULTI-STRANDED DNA STRUCTURES: TRIADS TETRADS &HEXADSR01GM034504 · NIGMS · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI PATEL, DINSHAW J · 1985 to 2013
$4.5M
Molecular Genetics of the GonococcusR01AI044239 · NIAID · NORTHWESTERN UNIVERSITY AT CHICAGO · PI SEIFERT, HANK S. · 1999 to 2014
$4.0M
Molecular Genetics of the gonococcusR21AI044239 · NIAID · NORTHWESTERN UNIVERSITY · PI SEIFERT, H. STEVEN · 2004 to 2004
$260k
NCI NIH HHS P30 CA008748NIAID NIH HHS R01 AI044239NIAID NIH HHS R21 AI044239NIAID NIH HHS R37 AI033493NIGMS NIH HHS GM34504NIGMS NIH HHS GM66354NIGMS NIH HHS P41 GM066354NIGMS NIH HHS R01 GM034504NIGMS NIH HHS T32 GM008061NIGMS NIH HHS T32GM08061
6 · The paper itself

Abstract

Neisseria gonorrhoeae is an obligate human pathogen that can escape immune surveillance through antigenic variation of surface structures such as pili. A G-quadruplex-forming (G4) sequence (5'-G(3)TG(3)TTG(3)TG(3)) located upstream of the N. gonorrhoeae pilin expression locus (pilE) is necessary for initiation of pilin antigenic variation, a recombination-based, high-frequency, diversity-generation system. We have determined NMR-based structures of the all parallel-stranded monomeric and 5' end-stacked dimeric pilE G-quadruplexes in monovalent cation-containing solutions. We demonstrate that the three-layered all parallel-stranded monomeric pilE G-quadruplex containing single-residue double-chain reversal loops, which can be modeled without steric clashes into the 3 nt DNA-binding site of RecA, binds and promotes E. coli RecA-mediated strand exchange in vitro. We discuss how interactions between RecA and monomeric pilE G-quadruplex could facilitate the specialized recombination reactions leading to pilin diversification.

Indexed as

G-QuadruplexesAntigens, BacterialBase PairingBase SequenceBinding SitesDeuterium Exchange MeasurementDNA, BacterialEscherichia coli ProteinsFimbriae ProteinsGC Rich SequenceImmune EvasionModels, MolecularNeisseria gonorrhoeaeNuclear Magnetic Resonance, BiomolecularProtein BindingRec A RecombinasesAntigens, BacterialDNA, BacterialEscherichia coli ProteinsFimbriae ProteinsRec A Recombinases

Identifiers

PMID23085077
PMCPMC3845372
OpenAlexW2150937967

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.