Evidence map›Paper›PMID 23084836›Full record

ArticleMolecular cell2012

Epigenetic regulation of condensin-mediated genome organization during the cell cycle and upon DNA damage through histone H3 lysine 56 acetylation.

Atsunari Tanaka, Hideki Tanizawa, Sira Sriswasdi, Osamu Iwasaki, Atreyi G Chatterjee, David W Speicher, Henry L Levin, Eishi Noguchi, Ken-Ichi Noma

Abstract read
In one paragraph

Article in Molecular cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Condensin action and compaction.Current genetics · 2019
    Review
  16. Review
  17. Mutation ofGenes & development · 2017
    Article
  18. Shelterin components mediate genome reorganization in response to replication stress.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Atsunari TanakaDepartment of Gene Expression and Regulation, The Wistar Institute, Philadelphia, PA 19104, USA.
Hideki Tanizawa
Sira Sriswasdi
Osamu Iwasaki
Atreyi G Chatterjee
David W Speicher
Henry L Levin
Eishi Noguchi
Ken-Ichi Noma

Funding

Tumor Microenvironment and MetastasisP30CA010815 · NCI · WISTAR INSTITUTE · PI Alessandro Gardini · 1985 to 2026
$75.9M
A New Methodology to Decipher Three-Dimensional Genome StructureDP2OD004348 · OD · WISTAR INSTITUTE · PI NOMA, KENICHI · 2008 to 2008
$3.1M
Studies of the Swi1-Swi3 Replication Fork Protection ComplexR01GM077604 · NIGMS · DREXEL UNIVERSITY · PI NOGUCHI, EISHI · 2008 to 2012
$1.6M
NCI NIH HHS CA010815NCI NIH HHS P30 CA010815NIGMS NIH HHS GM077604NIGMS NIH HHS R01 GM077604NIH HHS DP2 OD004348
6 · The paper itself

Abstract

Complex genome organizations participate in various nuclear processes including transcription, DNA replication, and repair. However, the mechanisms that generate and regulate these functional genome structures remain largely unknown. Here, we describe how the Ku heterodimer complex, which functions in nonhomologous end joining, mediates clustering of long terminal repeat retrotransposons at centromeres in fission yeast. We demonstrate that the CENP-B subunit, Abp1, functions as a recruiter of the Ku complex, which in turn loads the genome-organizing machinery condensin to retrotransposons. Intriguingly, histone H3 lysine 56 (H3K56) acetylation, which functions in DNA replication and repair, interferes with Ku localization at retrotransposons without disrupting Abp1 localization and, as a consequence, dissociates condensin from retrotransposons. This dissociation releases condensin-mediated genomic associations during S phase and upon DNA damage. ATR (ATM- and Rad3-related) kinase mediates the DNA damage response of condensin-mediated genome organization. Our study describes a function of H3K56 acetylation that neutralizes condensin-mediated genome organization.

Indexed as

Cell CycleDNA DamageEpigenesis, GeneticGenomeAcetylationAdenosine TriphosphatasesDNA-Binding ProteinsDNA, FungalHistonesLysineMicrofilament ProteinsMultiprotein ComplexesProtein Serine-Threonine KinasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsS PhaseABP1 protein, S cerevisiaeAdenosine Triphosphatasescondensin complexesDNA-Binding ProteinsDNA, FungalHistonesLysineMicrofilament ProteinsMultiprotein ComplexesProtein Serine-Threonine KinasesSaccharomyces cerevisiae Proteins

Identifiers

PMID23084836
PMCPMC3513591

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.