ReviewVirology2012
Microbial virus genome annotation-mustering the troops to fight the sequence onslaught.
Review in Virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
9 citing papers in PubMed.
- Genomic analysis of 40 prophages located in the genomes of 16 carbapenemase-producing clinical strains ofMicrobial genomics · 2020Article
- Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop.Journal of biomedical informatics · 2017Article
- Prokaryotic Virus Orthologous Groups (pVOGs): a resource for comparative genomics and protein family annotation.Nucleic acids research · 2017Article
- Virus Variation Resource - improved response to emergent viral outbreaks.Nucleic acids research · 2017Article
- Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation.Nucleic acids research · 2016Article
- NCBI viral genomes resource.Nucleic acids research · 2015Article
- Filovirus RefSeq entries: evaluation and selection of filovirus type variants, type sequences, and names.Viruses · 2014Article
- Article
- Crowdsourcing for bioinformatics.Bioinformatics (Oxford, England) · 2013Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
Abstract
The revolution in virus genome sequencing promises to effectively map the extant biological universe and reveal fundamental relationships between viral biology, genome structure, and evolution. Indeed, microbial virus genomes include large numbers of conserved coding sequences of unknown function as well as unique gene combinations, implying that that these viruses will be a significant source of novel protein biochemistry and genome architecture. Yet, making sense of the approaching phalanx of A's, G's, T's, and C's stretching across the genome sequencing horizon will require innovation and an unprecedented coordination of annotation efforts among stakeholders.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.