Evidence map›Paper›PMID 23083713›Full record

ArticleBiophysical journal2012

Design of peptide-membrane interactions to modulate single-file water transport through modified gramicidin channels.

Guillem Portella, Tanja Polupanow, Florian Zocher, Danila A Boytsov, Peter Pohl, Ulf Diederichsen, Bert L de Groot

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Computational analysis of local membrane properties.Journal of computer-aided molecular design · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Guillem PortellaInstitute for Research in Biomedicine - Barcelona, Barcelona, Spain.
Tanja Polupanow
Florian Zocher
Danila A Boytsov
Peter Pohl
Ulf Diederichsen
Bert L de Groot
Johannes Kepler University of Linz · ATUniversity of Göttingen · DEInstitute for Research in Biomedicine · ESMax Planck Institute for Biophysical Chemistry · DE

Funding

Austrian Science Fund FWF P 23679
6 · The paper itself

Abstract

Water permeability through single-file channels is affected by intrinsic factors such as their size and polarity and by external determinants like their lipid environment in the membrane. Previous computational studies revealed that the obstruction of the channel by lipid headgroups can be long-lived, in the range of nanoseconds, and that pore-length-matching membrane mimetics could speed up water permeability. To test the hypothesis of lipid-channel interactions modulating channel permeability, we designed different gramicidin A derivatives with attached acyl chains. By combining extensive molecular-dynamics simulations and single-channel water permeation measurements, we show that by tuning lipid-channel interactions, these modifications reduce the presence of lipid headgroups in the pore, which leads to a clear and selective increase in their water permeability.

Indexed as

Molecular Dynamics SimulationAcylationCell MembraneGramicidinLipid BilayersPermeabilityWaterGramicidinLipid BilayersWater

Identifiers

PMID23083713
PMCPMC3475385
OpenAlexW2160482395

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.