Evidence map›Paper›PMID 23083431›Full record

ArticleMolecular plant pathology2013

The inter-kingdom solo OryR regulator of Xanthomonas oryzae is important for motility.

Juan F González, Michael P Myers, Vittorio Venturi

Open access · bronzeAbstract read
In one paragraph

Article in Molecular plant pathology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
6.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Comparative genomic and functional analysis ofFrontiers in microbiology · 2022
    Article
  3. Article
  4. Structural basis for a bacterial Pip system plant effector recognition protein.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  5. LuxR Solos in the Plant EndophyteApplied and environmental microbiology · 2020
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Studies on synthetic LuxR solo hybrids.Frontiers in cellular and infection microbiology · 2015
    Article
  13. Article
  14. Article
  15. XocR, a LuxR solo required for virulence in Xanthomonas oryzae pv. oryzicola.Frontiers in cellular and infection microbiology · 2015
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Juan F GonzálezInternational Centre for Genetic Engineering and Biotechnology, Trieste, Italy.
Michael P Myers
Vittorio Venturi
International Centre for Genetic Engineering and Biotechnology · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The LuxR-type transcriptional regulator OryR of the rice pathogen Xanthomonas oryzae pv. oryzae (Xoo) is a member of a subgroup of regulators found in plant-associated bacteria that are known to respond to plant signals. OryR has been shown previously to positively regulate the neighbouring pip gene and to be important for rice virulence. The role of this inter-kingdom signalling regulator was investigated through a genome-wide transcriptome analysis. OryR was found to positively regulate 220 genes, whereas 110 were down-regulated. A significant over-representation of movement-related genes among the positively regulated ones was found, including 30 flagellar genes, accounting for 14% of the up-regulated genes above the two-fold cut-off value. In Xoo, both swimming and swarming respond to rice macerate and OryR plays a role in the induction of both of these types of motility under these conditions. In this study, we have also shown that the flagellar regulator flhF contains a lux box-like element in its promoter region, similar to the oryR-regulated neighbouring pip gene; via the use of a transcriptional fusion reporter, it was shown that flhF is regulated by OryR. Finally, the role of OryR in motility was also demonstrated by the significant reduction in flagellin content in the oryR Xoo mutant with respect to the wild-type, as observed by in planta proteomics studies.

Indexed as

Bacterial ProteinsGene Expression Regulation, BacterialOryzaSignal TransductionXanthomonasBacterial Proteins

Identifiers

PMID23083431
PMCPMC6638885
OpenAlexW1911077451

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.