Evidence map›Paper›PMID 23082859›Full record

ArticleFEMS microbiology letters2012

The Yersinia pseudotuberculosis degradosome is required for oxidative stress, while its PNPase subunit plays a degradosome-independent role in cold growth.

Amanda Henry, Justin Shanks, Ambro van Hoof, Jason A Rosenzweig

Open access · bronzeAbstract read
In one paragraph

Article in FEMS microbiology letters, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Frontiers in microbiology · 2019
    Article
  6. Review
  7. RNA helicases in RNA decay.Biochemical Society transactions · 2018
    Review
  8. Discovering RNA-Based Regulatory Systems forFrontiers in cellular and infection microbiology · 2018
    Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Amanda HenryDepartment of Biology, Center for Bionanotechnology and Environmental Research (CBER), Texas Southern University, Houston, TX, USA.
Justin Shanks
Ambro van Hoof
Jason A Rosenzweig
Texas Southern University · USThe University of Texas Health Science Center at Houston · US

Funding

RNA decay and processing activities of the RNA exosomeR01GM099790 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI VAN HOOF, AMBRO · 2012 to 2020
$2.6M
NIGMS NIH HHS R01 GM099790
6 · The paper itself

Abstract

Yersinia polynucleotide phosphorylase (PNPase), a 3'-5' exoribonuclease, has been shown to affect growth during several stress responses. In Escherichia coli, PNPase is one of the subunits of a multiprotein complex known as the degradosome, but also has degradosome-independent functions. The carboxy-terminus of E. coli ribonuclease E (RNase E) serves as the scaffold upon which PNPase, enolase (a glycolytic enzyme), and RhlB helicase all have been shown to bind. In the yersiniae, only PNPase has thus far been shown to physically interact with RNase E. We show by bacterial two-hybrid and co-immunoprecipitation assays that RhlB and enolase also interact with RNase E. Interestingly, although PNPase is required for normal growth at cold temperatures, assembly of the yersiniae degradosome was not required. However, degradosome assembly was required for growth in the presence of reactive oxygen species. These data suggest that while the Yersinia pseudotuberculosis PNPase plays a role in the oxidative stress response through a degradosome-dependent mechanism, PNPase's role during cold stress is degradosome-independent.

Indexed as

Oxidative StressCold TemperatureEndoribonucleasesHydrogen PeroxideMultienzyme ComplexesPhosphopyruvate HydratasePolyribonucleotide NucleotidyltransferaseProtein SubunitsRNA HelicasesStress, PhysiologicalYersinia pseudotuberculosisdegradosomeEndoribonucleasesHydrogen PeroxideMultienzyme ComplexesPhosphopyruvate HydratasePolyribonucleotide NucleotidyltransferaseProtein SubunitsRNA Helicases

Identifiers

PMID23082859
PMCPMC5832447
OpenAlexW2147009010

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.