Evidence map›Paper›PMID 23082059›Full record

ArticleWorld journal of gastroenterology2012

Hepatitis B virus pre-S2 start codon mutations in Indonesian liver disease patients.

Andi Utama, Marlinang Diarta Siburian, Ismail Fanany, Mariana Destila Bayu Intan, Rama Dhenni, Tri Shinta Kurniasih, Syafruddin A R Lelosutan, Wenny Astuti Achwan, Nasrul Zubir, Arnelis and 4 more

Open access · hybridAbstract read
In one paragraph

Article in World journal of gastroenterology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Hepatitis B virus infection in Indonesia.World journal of gastroenterology · 2015
    Review
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 1 institution in 1 country.

Andi UtamaMolecular Epidemiology Division, Mochtar Riady Institute for Nanotechnology, Universitas Pelita Harapan, Lippo Karawaci, Tangerang 15810, Banten, Indonesia. autama@mrinstitute.org
Marlinang Diarta Siburian
Ismail Fanany
Mariana Destila Bayu Intan
Rama Dhenni
Tri Shinta Kurniasih
Syafruddin A R Lelosutan
Wenny Astuti Achwan
Nasrul Zubir
Arnelis
Benyamin Lukito
Irawan Yusuf
Laurentius Adrianus Lesmana
Ali Sulaiman
Pelita Harapan University · ID

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimTo identify the prevalence of pre-S2 start codon mutations and to assess their association with liver disease progression.

methodsThe mutations were identified by direct sequencing from 73 asymptomatic carriers, 66 chronic hepatitis (CH), 66 liver cirrhosis (LC) and 63 hepatocellular carcinoma (HCC) patients. Statistical significances were determined using Fisher's exact test, χ² test, and t-test analyses whenever appropriate. Pre-S mutation as a risk factor for advanced liver disease was estimated by unconditional logistic regression model adjusted with age, sex, and hepatitis B e antigen (HBeAg). P < 0.05 was considered significant.

resultsMutation of the hepatitis B virus (HBV) pre-S2 start codon was found in 59 samples from 268 subjects (22.0%), with higher prevalence in patients with cirrhosis 27/66 (40.9%) followed by HCC 18/63 (28.6%), chronic hepatitis 12/66 (18.2%) and asymptomatic carriers 2/73 (2.7%) (P < 0.001). Logistic regression analysis showed that pre-S2 start codon mutation was an independent factor for progressive liver disease. Other mutations, at T130, Q132, and A138, were also associated with LC and HCC, although this was not statistically significant when adjusted for age, sex, and HBeAg. The prevalence of pre-S2 start codon mutation was higher in HBV/B than in HBV/C (23.0% vs 19.1%), whilst the prevalence of T130, Q132, and A138 mutation was higher in HBV/C than in HBV/B. The prevalence of pre-S2 start codon mutation was higher in LC (38.9%) and HCC (40.0%) than CH (5.6%) in HBeAg⁺ group, but it was similar between CH, LC and HCC in HBeAg⁻ group.

conclusionPre-S2 start codon mutation was higher in Indonesian patients compared to other Asian countries, and its prevalence was associated with advanced liver disease, particularly in HBeAg⁺ patients.

Indexed as

Codon, InitiatorMutationAdultBase SequenceCross-Sectional StudiesDisease ProgressionDNA, ViralFemaleGenetic MarkersHepatitis B Surface AntigensHepatitis B virusHumansIndonesiaLiver DiseasesLogistic ModelsMaleCodon, InitiatorDNA, ViralGenetic MarkersHepatitis B Surface Antigenspresurface protein 2, hepatitis B surface antigenProtein PrecursorsHepatitis B e antigen seroconversionHepatitis B virusIndonesiaLiver diseasePre-S2 start codon

Identifiers

PMID23082059
PMCPMC3471111
OpenAlexW2157472734

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.