Evidence map›Paper›PMID 23082028›Full record

ArticleMolecular & cellular proteomics : MCP2013

A bioinformatics approach for integrated transcriptomic and proteomic comparative analyses of model and non-sequenced anopheline vectors of human malaria parasites.

Ceereena Ubaida Mohien, David R Colquhoun, Derrick K Mathias, John G Gibbons, Jennifer S Armistead, Maria C Rodriguez, Mario Henry Rodriguez, Nathan J Edwards, Jürgen Hartler, Gerhard G Thallinger and 4 more

Abstract readComparative Study
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Proteotranscriptomics - A facilitator in omics research.Computational and structural biotechnology journal · 2022
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Differential roles of an Anopheline midgut GPI-anchored protein in mediating Plasmodium falciparum and Plasmodium vivax ookinete invasion.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2014
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Ceereena Ubaida MohienW Harry Feinstone Department of Molecular Microbiology & Immunology, Johns Hopkins Bloomberg School of Public Health & Malaria Research Institute, Baltimore, Maryland 21205, USA.
David R Colquhoun
Derrick K Mathias
John G Gibbons
Jennifer S Armistead
Maria C Rodriguez
Mario Henry Rodriguez
Nathan J Edwards
Jürgen Hartler
Gerhard G Thallinger
David R Graham
Jesus Martinez-Barnetche
Antonis Rokas
Rhoel R Dinglasan

Funding

Training: Molecular & Cellular Bases of Infectious DiseasesT32AI007417 · NIAID · JOHNS HOPKINS UNIVERSITY · PI Arturo Casadevall · 1994 to 2026
$11.9M
Small molecule protein-glycan inhib. as malaria transmission-blocking therapueticR01AI082587 · NIAID · JOHNS HOPKINS UNIVERSITY · PI DINGLASAN, RHOEL DAVID RAMOS · 2009 to 2013
$1.9M
Glycobiological Analysis of Plasmodium-Vector Host InteractionsK22AI077707 · NIAID · JOHNS HOPKINS UNIVERSITY · PI DINGLASAN, RHOEL DAVID RAMOS · 2009 to 2010
$270k
Characterizing the genomic patterns of variation in the fungal pathogen AspergillF31AI091343 · NIAID · VANDERBILT UNIVERSITY · PI GIBBONS, JOHN G · 2010 to 2011
$55k
NHLBI NIH HHS HHSN268201000032CNIAID NIH HHS F31 AI091343NIAID NIH HHS F31AI091343-01NIAID NIH HHS K22 AI077707NIAID NIH HHS R01 AI082587
6 · The paper itself

Abstract

Malaria morbidity and mortality caused by both Plasmodium falciparum and Plasmodium vivax extend well beyond the African continent, and although P. vivax causes between 80 and 300 million severe cases each year, vivax transmission remains poorly understood. Plasmodium parasites are transmitted by Anopheles mosquitoes, and the critical site of interaction between parasite and host is at the mosquito's luminal midgut brush border. Although the genome of the "model" African P. falciparum vector, Anopheles gambiae, has been sequenced, evolutionary divergence limits its utility as a reference across anophelines, especially non-sequenced P. vivax vectors such as Anopheles albimanus. Clearly, technologies and platforms that bridge this substantial scientific gap are required in order to provide public health scientists with key transcriptomic and proteomic information that could spur the development of novel interventions to combat this disease. To our knowledge, no approaches have been published that address this issue. To bolster our understanding of P. vivax-An. albimanus midgut interactions, we developed an integrated bioinformatic-hybrid RNA-Seq-LC-MS/MS approach involving An. albimanus transcriptome (15,764 contigs) and luminal midgut subproteome (9,445 proteins) assembly, which, when used with our custom Diptera protein database (685,078 sequences), facilitated a comparative proteomic analysis of the midgut brush borders of two important malaria vectors, An. gambiae and An. albimanus.

Indexed as

Computational BiologyAmino Acid SequenceAnimalsAnophelesChromatography, LiquidDatabases, ProteinHost-Parasite InteractionsHumansInsect ProteinsInsect VectorsMalariaMicrovilliPlasmodium falciparumPlasmodium vivaxProteomeProteomicsInsect ProteinsProteomeRNA

Identifiers

PMID23082028
PMCPMC3536893

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.