Evidence map›Paper›PMID 23079596›Full record

ArticleDevelopmental cell2012

An RNAi screen reveals intestinal regulators of branching morphogenesis, differentiation, and stem cell proliferation in planarians.

David J Forsthoefel, Noëlle P James, David J Escobar, Joel M Stary, Ana P Vieira, Forrest A Waters, Phillip A Newmark

Open access · bronzeAbstract read
In one paragraph

Article in Developmental cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 140 citations in OpenAlex.

  1. Article
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  12. Review
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  14. Article
  15. A Planarian Model System to Study Host-Pathogen Interactions.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  16. PLANAtools-An interactive gene expression repository for the planarianFrontiers in cell and developmental biology · 2023
    Article
  17. Article
  18. Article
  19. Biomolecules · 2022
    Article
  20. Article

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

David J ForsthoefelHoward Hughes Medical Institute and Department of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Noëlle P James
David J Escobar
Joel M Stary
Ana P Vieira
Forrest A Waters
Phillip A Newmark
Howard Hughes Medical Institute · USUniversity of Illinois Urbana-Champaign · US

Funding

Stem cell proliferation and differentiation in planariaR01HD043403 · NICHD · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI Phillip A Newmark · 2003 to 2026
$5.1M
Stem cell-based renewal and regeneration in the intestine of a model organismF32DK077469 · NIDDK · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI FORSTHOEFEL, DAVID J · 2006 to 2009
$146k
Howard Hughes Medical InstituteNICHD NIH HHS R01 HD043403NICHD NIH HHS R01-HD043403NIDDK NIH HHS F32 DK077469NIDDK NIH HHS F32-DK077469
6 · The paper itself

Abstract

Planarians grow and regenerate organs by coordinating proliferation and differentiation of pluripotent stem cells with remodeling of postmitotic tissues. Understanding how these processes are orchestrated requires characterizing cell-type-specific gene expression programs and their regulation during regeneration and homeostasis. To this end, we analyzed the expression profile of planarian intestinal phagocytes, cells responsible for digestion and nutrient storage/distribution. Utilizing RNA interference, we identified cytoskeletal regulators required for intestinal branching morphogenesis and a modulator of bioactive sphingolipid metabolism, ceramide synthase, required for the production of functional phagocytes. Additionally, we found that a gut-enriched homeobox transcription factor, nkx-2.2, is required for somatic stem cell proliferation, suggesting a niche-like role for phagocytes. Identification of evolutionarily conserved regulators of intestinal branching, differentiation, and stem cell dynamics demonstrates the utility of the planarian digestive system as a model for elucidating the mechanisms controlling postembryonic organogenesis.

Indexed as

Cell ProliferationRNA InterferenceAnimalsCell DifferentiationCytoskeletal ProteinsGene Expression ProfilingHomeobox Protein Nkx-2.2Homeodomain ProteinsIntestine, SmallMorphogenesisOxidoreductasesPlanariansSphingolipidsStem CellsTranscription FactorsZebrafish ProteinsCytoskeletal Proteinsdihydroceramide desaturaseHomeobox Protein Nkx-2.2Homeodomain ProteinsOxidoreductasesSphingolipidsTranscription FactorsZebrafish Proteins

Identifiers

PMID23079596
PMCPMC3521571
OpenAlexW2029916705

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.