Evidence map›Paper›PMID 23079477›Full record

ArticleJournal of structural biology2013

Specificity of an anti-capsid antibody associated with Hepatitis B Virus-related acute liver failure.

Weimin Wu, Zhaochun Chen, Naiqian Cheng, Norman R Watts, Stephen J Stahl, Patrizia Farci, Robert H Purcell, Paul T Wingfield, Alasdair C Steven

Open access · greenAbstract read
In one paragraph

Article in Journal of structural biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Hepatitis B Core Protein Capsids.Sub-cellular biochemistry · 2021
    Review
  3. Article
  4. Article
  5. Article
  6. Accurate model annotation of a near-atomic resolution cryo-EM map.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Subunit folds and maturation pathway of a dsRNA virus capsid.Structure (London, England : 1993) · 2013
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Weimin WuLaboratory of Structural Biology, National Institute for Arthritis, Musculoskeletal and Skin Diseases, National Institutes of Health, Bethesda, MD 20892, United States.
Zhaochun Chen
Naiqian Cheng
Norman R Watts
Stephen J Stahl
Patrizia Farci
Robert H Purcell
Paul T Wingfield
Alasdair C Steven
National Institutes of Health · USNational Institute of Allergy and Infectious Diseases · USNational Institute of Arthritis and Musculoskeletal and Skin Diseases · USProtein Express (United States) · US

Funding

Molecular Mechanisms of Pathogenesis of Acute and Chronic Liver DiseasesZIAAI000999 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI FARCI, PATRIZIA · 2009 to 2025
$25.3M
Structural Biology Of Virus AssemblyZIAAR027002 · NIAMS · NATIONAL INSTITUTE OF ARTHRITIS AND MUSCULOSKELETAL AND SKIN DISEASES · PI WINGFIELD, PAUL T · 2009 to 2024
$19.2M
Structure And Assembly Of The Hepatitis B Nucleocapsid ProteinZIAAR041117 · NIAMS · NATIONAL INSTITUTE OF ARTHRITIS AND MUSCULOSKELETAL AND SKIN DISEASES · PI WINGFIELD, PAUL T · 2009 to 2015
$5.0M
Pathogenesis of Parenteral Viral HepatitisZIAAI001015 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI PURCELL, ROBERT H. · 2009 to 2012
$3.0M
Intramural NIH HHS ZIA AI001015Intramural NIH HHS ZIA AR027002Intramural NIH HHS ZIA AR041117
6 · The paper itself

Abstract

Previously, the livers of patients suffering from acute liver failure (ALF), a potentially fatal syndrome arising from infection by Hepatitis B Virus (HBV), were found to contain massive amounts of an antibody specific for the core antigen (HBcAg) capsid. We have used cryo-electron microscopy and molecular modeling to define its epitope. HBV capsids are icosahedral shells with 25Å-long dimeric spikes, each a 4-helix bundle, protruding from the contiguous "floor". Of the anti-HBcAg antibodies previously characterized, most bind around the spike tip while one binds to the floor. The ALF-associated antibody binds tangentially to a novel site on the side of the spike. This epitope is conformational. The Fab binds with high affinity to its principal determinants but has lower affinities for quasi-equivalent variants. The highest occupancy site is on one side of a spike, with no detectable binding to the corresponding site on the other side. Binding of one Fab per dimer was also observed by analytical ultracentrifugation. The Fab did not bind to the e-antigen dimer, a non-assembling variant of capsid protein. These findings support the propositions that antibodies with particular specificities may correlate with different clinical expressions of HBV infection and that antibodies directed to particular HBcAg epitopes may be involved in ALF pathogenesis.

Indexed as

Antibody SpecificityChromatography, AffinityCryoelectron MicroscopyEpitope MappingHepatitis BHepatitis B AntibodiesHepatitis B virusHumansLiver Failure, AcuteModels, MolecularProtein Structure, QuaternaryProtein Structure, SecondaryViral Core ProteinsHepatitis B AntibodiesViral Core Proteins

Identifiers

PMID23079477
PMCPMC3525778
OpenAlexW1969773037

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.