Evidence map›Paper›PMID 23079241›Full record

ArticleJournal of molecular biology2013

Unclosed HIV-1 capsids suggest a curled sheet model of assembly.

Zhiheng Yu, Megan J Dobro, Cora L Woodward, Artem Levandovsky, Cindy M Danielson, Virginie Sandrin, Jiong Shi, Christopher Aiken, Roya Zandi, Thomas J Hope and 1 more

Abstract read
In one paragraph

Article in Journal of molecular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed.

  1. Article
  2. Article
  3. Blockade ofmBio · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Maturation of retroviruses.Current opinion in virology · 2019
    Review
  14. Why large icosahedral viruses need scaffolding proteins.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  15. Article
  16. Review
  17. Review
  18. Review
  19. Article
  20. Hepatitis B Virus Capsid Completion Occurs through Error Correction.Journal of the American Chemical Society · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Zhiheng YuCryoEM Shared Resources, Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.
Megan J Dobro
Cora L Woodward
Artem Levandovsky
Cindy M Danielson
Virginie Sandrin
Jiong Shi
Christopher Aiken
Roya Zandi
Thomas J Hope
Grant J Jensen

Funding

X-ray Cryst. CoreP50GM082545 · NIGMS · UNIVERSITY OF UTAH · PI HOPE, THOMAS · 2007 to 2018
$51.1M
Mechanism and Regulation of HIV-1 UncoatingR01AI076121 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI AIKEN, CHRISTOPHER R · 2008 to 2016
$3.1M
NIAID NIH HHS R01 AI076121NIAID NIH HHS R01 AI407770NIGMS NIH HHS 2P50GM082545-06NIGMS NIH HHS P50 GM082545
6 · The paper itself

Abstract

The RNA genome of retroviruses is encased within a protein capsid. To gather insight into the assembly and function of this capsid, we used electron cryotomography to image human immunodeficiency virus (HIV) and equine infectious anemia virus (EIAV) particles. While the majority of viral cores appeared closed, a variety of unclosed structures including rolled sheets, extra flaps, and cores with holes in the tip were also seen. Simulations of nonequilibrium growth of elastic sheets recapitulated each of these aberrations and further predicted the occasional presence of seams, for which tentative evidence was also found within the cryotomograms. To test the integrity of viral capsids in vivo, we observed that ~25% of cytoplasmic HIV complexes captured by TRIM5α had holes large enough to allow internal green fluorescent protein (GFP) molecules to escape. Together, these findings suggest that HIV assembly at least sometimes involves the union in space of two edges of a curling sheet and results in a substantial number of unclosed forms.

Indexed as

AnimalsAntiviral Restriction FactorsCapsidCarrier ProteinsComputer SimulationCryoelectron MicroscopyGreen Fluorescent ProteinsHEK293 CellsHIV-1HumansInfectious Anemia Virus, EquineMicroscopy, FluorescenceModels, MolecularTripartite Motif ProteinsUbiquitin-Protein LigasesViral Core ProteinsAntiviral Restriction FactorsCarrier ProteinsGreen Fluorescent ProteinsTRIM5 protein, humanTripartite Motif ProteinsUbiquitin-Protein LigasesViral Core Proteins

Identifiers

PMID23079241
PMCPMC3597093

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.