Evidence map›Paper›PMID 23078916›Full record

ArticleDevelopmental biology2013

A gene network that coordinates preplacodal competence and neural crest specification in zebrafish.

Neha Bhat, Hye-Joo Kwon, Bruce B Riley

Open access · greenAbstract read
In one paragraph

Article in Developmental biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 69 citations in OpenAlex.

  1. Article
  2. Review
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  6. Exposure to valproic acid (VPA) reproducesmicroPublication biology · 2023
    Article
  7. Review
  8. Comparative assessment of Fgf's diverse roles in inner ear development: A zebrafish perspective.Developmental dynamics : an official publication of the American Association of Anatomists · 2021
    Review
  9. Article
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  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Identification of Novel Gata3 Distal Enhancers Active in Mouse Embryonic Lens.Developmental dynamics : an official publication of the American Association of Anatomists · 2018
    Article
  18. Specifying neural crest cells: From chromatin to morphogens and factors in between.Wiley interdisciplinary reviews. Developmental biology · 2018
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Neha BhatBiology Department, Texas A&M University, College Station, TX 77843-3258, USA.
Hye-Joo Kwon
Bruce B Riley
Texas A&M University · US

Funding

GENETIC ANALYSIS OF INNER EAR DEVELOPMENT IN ZEBRAFISHR01DC003806 · NIDCD · TEXAS A&M UNIVERSITY SYSTEM · PI RILEY, BRUCE B · 1998 to 2023
$7.2M
NIDCD NIH HHS R01 DC003806NIDCD NIH HHS R01-DC03806
6 · The paper itself

Abstract

Preplacodal ectoderm (PPE) and neural crest (NC) are specified at the interface of neural and nonneural ectoderm and together contribute to the peripheral nervous system in all vertebrates. Bmp activates early steps for both fates during late blastula stage. Low Bmp activates expression of transcription factors Tfap2a and Tfap2c in the lateral neural plate, thereby specifying neural crest fate. Elevated Bmp establishes preplacodal competence throughout the ventral ectoderm by coinducing Tfap2a, Tfap2c, Foxi1 and Gata3. PPE specification occurs later at the end of gastrulation and requires complete attenuation of Bmp, yet expression of PPE competence factors continues well past gastrulation. Here we show that competence factors positively regulate each other's expression during gastrulation, forming a self-sustaining network that operates independently of Bmp. Misexpression of Tfap2a in embryos blocked for Bmp from late blastula stage can restore development of both PPE and NC. However, Tfap2a alone is not sufficient to activate any other competence factors nor does it rescue individual placodes. On the other hand, misexpression of any two competence factors in Bmp-blocked embryos can activate the entire transcription factor network and support the development of NC, PPE and some individual placodes. We also show that while these factors are partially redundant with respect to PPE specification, they later provide non-redundant functions needed for development of specific placodes. Thus, we have identified a gene regulatory network that coordinates development of NC, PPE and individual placodes in zebrafish.

Indexed as

AnimalsBone Morphogenetic ProteinsCell DifferentiationDNA, ComplementaryEctodermGene Expression Regulation, DevelopmentalGene Regulatory NetworksIn Situ HybridizationMorpholinosNeural CrestPeripheral Nervous SystemPyrazolesPyrimidinesReal-Time Polymerase Chain ReactionTranscription FactorsZebrafishBone Morphogenetic ProteinsDNA, ComplementarydorsomorphinMorpholinosPyrazolesPyrimidinesTranscription Factors

Identifiers

PMID23078916
PMCPMC3508392
OpenAlexW2045865999

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.