Evidence map›Paper›PMID 23078764›Full record

ArticleGene2013

DNA-binding motif and target genes of the imprinted transcription factor PEG3.

Michelle M Thiaville, Jennifer M Huang, Hana Kim, Muhammad B Ekram, Tae-Young Roh, Joomyeong Kim

Open access · greenAbstract read
In one paragraph

Article in Gene, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 63 citations in OpenAlex.

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  16. Decorin is a devouring proteoglycan: Remodeling of intracellular catabolism via autophagy and mitophagy.Matrix biology : journal of the International Society for Matrix Biology · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Michelle M ThiavilleDepartment of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.
Jennifer M Huang
Hana Kim
Muhammad B Ekram
Tae-Young Roh
Joomyeong Kim
Louisiana State University · USPohang University of Science and Technology · KR

Funding

Imprinting studies of a paternally expressed Usp29 geneR01GM066225 · NIGMS · UNIVERSITY OF CALIF-LAWRNC LVRMR NAT LAB · PI KIM, JOOMYEONG · 2004 to 2013
$2.6M
Retrotransposon as a major source to epigenetic variations in the human genomeR15ES019118 · NIEHS · LOUISIANA STATE UNIV A&M COL BATON ROUGE · PI KIM, JOOMYEONG · 2010 to 2010
$436k
NIEHS NIH HHS R15 ES019118NIEHS NIH HHS R15-ES019118NIGMS NIH HHS R01 GM066225NIGMS NIH HHS R01-GM066225
6 · The paper itself

Abstract

The Peg3 gene is expressed only from the paternally inherited allele located on proximal mouse chromosome 7. The PEG3 protein encoded by this imprinted gene is predicted to bind DNA based on its multiple zinc finger motifs and nuclear localization. In the current study, we demonstrated PEG3's DNA-binding ability by characterizing its binding motif and target genes. We successfully identified target regions bound by PEG3 from mouse brain extracts using chromatin immunoprecipitation analysis. PEG3 was demonstrated to bind these candidate regions through the consensus DNA-binding motif AGTnnCnnnTGGCT. In vitro promoter assays established that PEG3 controls the expression of a given gene through this motif. Consistent with these observations, the transcriptional levels of a subset of the target genes are also affected in a mutant mouse model with reduced levels of PEG3 protein. Overall, these results confirm PEG3 as a DNA-binding protein controlling specific target genes that are involved in distinct cellular functions.

Indexed as

AnimalsChromosomes, MammalianGene Expression RegulationKruppel-Like Transcription FactorsMiceMice, Mutant StrainsResponse ElementsKruppel-Like Transcription FactorsPeg3 protein, mouse

Identifiers

PMID23078764
PMCPMC3513644
OpenAlexW2165355171

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.