Evidence map›Paper›PMID 23076708›Full record

ArticleMolecules and cells2012

Differential promoter methylation and histone modification contribute to the brain specific expression of the mouse Mbu-1 gene.

Byungtak Kim, Seongeun Kang, Sun Jung Kim

Abstract read
In one paragraph

Article in Molecules and cells, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. TheFrontiers in oncology · 2021
    Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Byungtak KimDepartment of Life Science, Dongguk University-Seoul, Seoul 100-715, Korea.
Seongeun Kang
Sun Jung Kim

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mbu-1 (Csrnp-3) is a mouse gene that was identified in our previous study as showing highly restricted expression to the central nervous system. In this study, to elucidate the regulatory mechanism for tissue specificity of the gene, epigenetic approaches that identify the profiles of CpG methylation, as well as histone modifications at the promoter region were conducted. Methylation-specific PCR revealed that the CpG sites in brain tissues from embryo to adult stages showed virtually no methylation (0.052-0.67%). Lung (9.0%) and pancreas (3.0%) also showed lower levels. Other tissues such as liver, kidney, and heart showed much higher methylation levels ranging from approximately 39-93%. Treatment of 5-aza-2'-deoxycytidine (5-Aza-dC) significantly decreased promoter methylation, reactivating Mbu-1 expression in NG108-15 and Neuro-2a neuronal cells. Chromatin immunoprecipitation assay revealed that 5-Aza-dC decreased levels of acetylated H3K9 and methylated H3K4, and increased methylated H3K9. This result indicates that CpG methylation converses with histone modifications in an opposing sense of regulating Mbu-1 expression.

Indexed as

Promoter Regions, GeneticAnimalsApoptosis Regulatory ProteinsAzacitidineBrainCell Line, TumorChromatin ImmunoprecipitationCpG IslandsDecitabineDNA-Binding ProteinsDNA MethylationEpigenesis, GeneticHistonesMiceNerve Tissue ProteinsNuclear ProteinsApoptosis Regulatory ProteinsAzacitidineDecitabineDNA-Binding ProteinsHistonesNerve Tissue ProteinsNuclear ProteinsTaip2 protein, mouse

Identifiers

PMID23076708
PMCPMC3887793

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.