Evidence map›Paper›PMID 23076535›Full record

ArticleMolecular biology reports2013

Efficacy analysis of combining three comparative-omics profilings to screen candidate biological macromolecules.

Ziwei Feng, Bei Lin, Yong Xu, Liancheng Zhu, Juanjuan Liu, Jian Gao

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Molecular biology reports, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Biometric Identification ofBiosensors · 2021
    Article
  2. Gene expression profile analysis in response to α1,2-fucosyl transferase (FUT1) gene transfection in epithelial ovarian carcinoma cells.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ziwei FengDepartment of Obstetrics and Gynecology, Shengjing Hospital Affiliated to China Medical University, Shenyang City, 110004, Liaoning Province, People's Republic of China. sciencefzw@163.com
Bei Lin
Yong Xu
Liancheng Zhu
Juanjuan Liu
Jian Gao

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To evaluate the efficacy of integrated comparative omics in screening candidate biological macromolecules, three methods, namely, 2-DE + MALDI-TOF-MS, tumor-associated cDNA microarray and whole-transcriptome cDNA microarray were examined by three biotechnological companies to compare a stable transfected cell line with its control one. The results showed that the percentages of the up-regulate in three methods are largely consistent. 21.59 % of tumor-associated microarray results are the same with that of whole-transcriptome microarray. SOD2 is the unique intersection of three methods. Consulting the results of pI and Mw derived from microarray cannot increase the detection rate of target molecules during protein spot selection for mass spectrometry. Two protein spots with different regulating directions were identified to be the same protein. Conclusively, proteomic and genomic methods reveal the macromolecular changes from different aspects. Their detection ranges are complementary. The combination of different genomic methods can improve the validity and stability and reduce the noise changes. However, it is no sense to compare proteomics with genomics.

Indexed as

BiomarkersCell LineCell Line, TumorDown-RegulationElectrophoresis, Gel, Two-DimensionalGene Expression ProfilingHumansOligonucleotide Array Sequence AnalysisProteomeProteomicsSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationTranscriptomeUp-RegulationBiomarkersProteome

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.