Evidence map›Paper›PMID 23076011›Full record

ReviewBiochimica et biophysica acta2013

Recent advances in the structural mechanisms of DNA glycosylases.

Sonja C Brooks, Suraj Adhikary, Emily H Rubinson, Brandt F Eichman

Abstract readReview
In one paragraph

Review in Biochimica et biophysica acta, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 109 papers.

0numbers the graph read from it
0cells of the map it votes in
109citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

109 citing papers in PubMed.

  1. Article
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  17. Profiling of Barley, Wheat, and RyeInternational journal of molecular sciences · 2023
    Article
  18. Article
  19. RNA editing: Expanding the potential of RNA therapeutics.Molecular therapy : the journal of the American Society of Gene Therapy · 2023
    Review
  20. Review

49 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Sonja C BrooksDepartment of Biological Sciences and Center for Structural Biology, Vanderbilt University, Nashville, TN 37232, USA.
Suraj Adhikary
Emily H Rubinson
Brandt F Eichman

Funding

Structural Biology Facility CoreP30ES000267 · NIEHS · VANDERBILT UNIVERSITY · PI GUENGERICH, F PETER · 1985 to 2014
$20.3M
TRAINING PROGRAM IN ENVIRONMENTAL TOXICOLOGYT32ES007028 · NIEHS · VANDERBILT UNIVERSITY · PI F PETER Guengerich, Fiona Edith Harrison · 1985 to 2026
$15.7M
MOLECULAR BIOPHYSICS TRAINING PROGRAM AT VANDERBILTT32GM008320 · NIGMS · VANDERBILT UNIVERSITY · PI CHAZIN, WALTER J. · 1989 to 2023
$7.9M
Mechanisms of selective excision and oxidative repair of alkylated DNAR01ES019625 · NIEHS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI CAMPS, MANEL · 2011 to 2015
$1.7M
NIEHS NIH HHS P30 ES000267NIEHS NIH HHS R01 ES019625NIEHS NIH HHS T32 ES007028NIEHS NIH HHS T32 ES07028NIGMS NIH HHS T32 GM008320
6 · The paper itself

Abstract

DNA glycosylases safeguard the genome by locating and excising a diverse array of aberrant nucleobases created from oxidation, alkylation, and deamination of DNA. Since the discovery 28years ago that these enzymes employ a base flipping mechanism to trap their substrates, six different protein architectures have been identified to perform the same basic task. Work over the past several years has unraveled details for how the various DNA glycosylases survey DNA, detect damage within the duplex, select for the correct modification, and catalyze base excision. Here, we provide a broad overview of these latest advances in glycosylase mechanisms gleaned from structural enzymology, highlighting features common to all glycosylases as well as key differences that define their particular substrate specificities.

Indexed as

AnimalsDNADNA DamageDNA GlycosylasesHumansProtein Structure, TertiaryStructure-Activity RelationshipDNADNA Glycosylases

Identifiers

PMID23076011
PMCPMC3530658

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.