Evidence map›Paper›PMID 23074223›Full record

ArticleThe Journal of biological chemistry2012

A novel regulatory factor recruits the nucleosome remodeling complex to wingless integrated (Wnt) signaling gene promoters in mouse embryonic stem cells.

Jeffrey J Kim, Omar Khalid, Sheynie Vo, Ho-hyun Sun, David T W Wong, Yong Kim

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Pluripotency Factors on Their Lineage Move.Stem cells international · 2016
    Review
  11. The nucleosome remodeling and deacetylase complex in development and disease.Translational research : the journal of laboratory and clinical medicine · 2015
    Review
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution.

Jeffrey J KimLaboratory of Stem Cell and Cancer Epigenetic Research, UCLA, Los Angeles, California 90095, USA.
Omar Khalid
Sheynie Vo
Ho-hyun Sun
David T W Wong
Yong Kim
UCLA Jonsson Comprehensive Cancer Center

Funding

p12CDK2-AP1 in Cell Cycle Control &Oral CarcinogenesisR01DE014857 · NIDCR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WONG, DAVID T · 2003 to 2006
$1.6M
Functional Significance of CDK2AP1 in Epigenetic Regulation of Oral CancerF30DE020003 · NIDCR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI KIM, JEFFREY J · 2009 to 2011
$74k
NIDCR NIH HHS F30 DE020003NIDCR NIH HHS F30DE020003NIDCR NIH HHS R01 DE014857NIDCR NIH HHS R01DE014857NIDCR NIH HHS T32DE07269
6 · The paper itself

Abstract

The nucleosome remodeling and deacetylation (NuRD) complex is required for modulating the transcription of essential pluripotency genes in ESC self-renewal. MBD3 is considered a key player in the formation of a functional NuRD complex. The recruitment of MBD3 to methylated promoters may require other prerequisite factors. We show that cyclin-dependent kinase 2-associated protein 1 (CDK2AP1), an essential gene for early embryonic development, plays a role in pluripotency of ESC by engaging MBD3 to the promoter region of Wnt signaling genes. The occupancy of MBD3 on several promoters of Wnt genes was significantly lost in the absence of CDK2AP1, resulting in hyperactivation of Wnt. We propose that the transcriptional modulation of the Wnt pathway mediated by NuRD requires the presence of essential auxiliary components such as CDK2AP1, which may aid the association of the complex with specific focal regions of the target promoters.

Indexed as

AnimalsDNA-Binding ProteinsDNA MethylationEmbryonic Stem CellsEpigenesis, GeneticGene DeletionGene Expression ProfilingMiceModels, BiologicalModels, GeneticNucleosomesPhenotypePromoter Regions, GeneticProtein KinasesSignal TransductionStem CellsCdk2ap1 protein, mouseDNA-Binding ProteinsMbd3 protein, mouseNucleosomesProtein KinasesTranscription FactorsTumor Suppressor ProteinsWnt Proteins

Identifiers

PMID23074223
PMCPMC3510811
OpenAlexW2065507856

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.