ArticlePlant signaling & behavior2012
Tissue specificity and differential expression of transcription factors in tomato provide hints of unique regulatory networks during fruit ripening.
Article in Plant signaling & behavior, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.
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Who cites it
11 citing papers in PubMed, 1 synthesis or guideline pooled it, 32 citations in OpenAlex.
- Transcriptome-based meta-analysis of drought stress regulatory genes in tomato.BMC plant biology · 2025Pooled it
- Tissue specific mechanisms of tuber dormancy after 1,4-dimethylnaphthalene treatment in potato.Food chemistry. Molecular sciences · 2026Article
- Genome-wide identification and expression analysis of the bHLH gene family in Lilium davidii var. unicolor and its response to abiotic stress.BMC plant biology · 2026Article
- Organ-level gene-regulatory networks inferred from transcriptomic data reveal context-specific regulation and highlight novel regulators of ripening and ABA-mediated responses in tomato.Plant communications · 2025Article
- Ethylene response factor SlERF.D6 promotes ripening in part through transcription factors SlDEAR2 and SlTCP12.Proceedings of the National Academy of Sciences of the United States of America · 2025Article
- The cacao gene atlas: a transcriptome developmental atlas reveals highly tissue-specific and dynamically-regulated gene networks in Theobroma cacao L.BMC plant biology · 2024Article
- A comparative transcriptomics and eQTL approach identifies SlWD40 as a tomato fruit ripening regulator.Plant physiology · 2022Article
- Genome-wide identification and comprehensive analyses ofFrontiers in plant science · 2022Article
- Identification of tomato accessions as source of new genes for improving heat tolerance: from controlled experiments to field.BMC plant biology · 2021Article
- Cross-Species Comparison of Fruit-Metabolomics to Elucidate Metabolic Regulation of Fruit Polyphenolics Among Solanaceous Crops.Metabolites · 2020Article
- Genome-wide analysis and expression profiling of zinc finger homeodomain (ZHD) family genes reveal likely roles in organ development and stress responses in tomato.BMC genomics · 2017Article
Corrections and comments
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Authors and funding
5 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Tissue specificity or dramatically different expression levels of transcription factors in different tissue types allows differential regulation of tissue development as well as alternate modes of metabolic regulation. Recently we reported (Rohrmann et al., 2011) the development of a quantitative real-time PCR platform (qRT-PCR) that allows accurate quantification of the expression level of approximately 1000 tomato transcription factors. Application of this platform to samples collected during a ripening time course of wild type tomato and the high pigment mutant hp1 allowed us to identify transcription factors of importance both to ripening per se and to the metabolic shifts that occur during this critical biological process. Here we extend the quantitative real-time PCR analyses to include samples from flower, leaf, stem and root of wild type tomato. Co-expression network analysis to identify both conserved and unique regulatory networks both between individual tissues of tomato and also in cross-species comparisons of specific tissues, suggested some key TF genes which are involved in photosynthesis and fruit development.
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