Evidence map›Paper›PMID 23071770›Full record

ArticlePloS one2012

Computational modeling reveals dendritic origins of GABA(A)-mediated excitation in CA1 pyramidal neurons.

Naomi Lewin, Emre Aksay, Colleen E Clancy

Erratum issuedOpen access · goldAbstract readValidation Study
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.6field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
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  5. Article
  6. Article
  7. Review
  8. Reduced Efficacy of the KCC2 Cotransporter Promotes Epileptic Oscillations in a Subiculum Network Model.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2016
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Naomi LewinDepartment of Physiology and Biophysics, Weill Medical College of Cornell University, New York, NY, USA.
Emre Aksay
Colleen E Clancy
Cornell University · USUniversity of California, Davis · US

Funding

Weill Cornell/Rockefeller/Sloan-Kettering MST ProgramT32GM007739 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI HSU, KATHARINE C · 1985 to 2023
$51.1M
The computational importance of cerebellar processingR01EY021581 · NEI · WEILL MEDICAL COLL OF CORNELL UNIV · PI AKSAY, EMRE R · 2012 to 2016
$2.8M
Pharmacogenomics and antiarrhythmic therapy: An in silico investigationR01HL085592 · NHLBI · WEILL MEDICAL COLL OF CORNELL UNIV · PI CLANCY, COLLEEN E · 2007 to 2011
$1.8M
NEI NIH HHS 1R01EY021581-01NEI NIH HHS R01 EY021581NHLBI NIH HHS R01 HL085592NHLBI NIH HHS R01-HL-085592-05NHLBI NIH HHS R01-HL-085592-S2NIGMS NIH HHS 5 T 32 GM 07739NIGMS NIH HHS T32 GM007739
6 · The paper itself

Abstract

GABA is the key inhibitory neurotransmitter in the adult central nervous system, but in some circumstances can lead to a paradoxical excitation that has been causally implicated in diverse pathologies from endocrine stress responses to diseases of excitability including neuropathic pain and temporal lobe epilepsy. We undertook a computational modeling approach to determine plausible ionic mechanisms of GABA(A)-dependent excitation in isolated post-synaptic CA1 hippocampal neurons because it may constitute a trigger for pathological synchronous epileptiform discharge. In particular, the interplay intracellular chloride accumulation via the GABA(A) receptor and extracellular potassium accumulation via the K/Cl co-transporter KCC2 in promoting GABA(A)-mediated excitation is complex. Experimentally it is difficult to determine the ionic mechanisms of depolarizing current since potassium transients are challenging to isolate pharmacologically and much GABA signaling occurs in small, difficult to measure, dendritic compartments. To address this problem and determine plausible ionic mechanisms of GABA(A)-mediated excitation, we built a detailed biophysically realistic model of the CA1 pyramidal neuron that includes processes critical for ion homeostasis. Our results suggest that in dendritic compartments, but not in the somatic compartments, chloride buildup is sufficient to cause dramatic depolarization of the GABA(A) reversal potential and dominating bicarbonate currents that provide a substantial current source to drive whole-cell depolarization. The model simulations predict that extracellular K(+) transients can augment GABA(A)-mediated excitation, but not cause it. Our model also suggests the potential for GABA(A)-mediated excitation to promote network synchrony depending on interneuron synapse location - excitatory positive-feedback can occur when interneurons synapse onto distal dendritic compartments, while interneurons projecting to the perisomatic region will cause inhibition.

Indexed as

Computer SimulationCA1 Region, HippocampalCell PolarityChloridesDendritesgamma-Aminobutyric AcidHomeostasisK Cl- CotransportersPotassiumPotassium Channels, Voltage-GatedSymportersVoltage-Gated Sodium ChannelsChloridesgamma-Aminobutyric AcidK Cl- CotransportersPotassiumPotassium Channels, Voltage-GatedSymportersVoltage-Gated Sodium Channels

Identifiers

PMID23071770
PMCPMC3470566
OpenAlexW2010621915

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.