Evidence map›Paper›PMID 23071693›Full record

ArticlePloS one2012

New genotypes of Orientia tsutsugamushi isolated from humans in Eastern Taiwan.

Hui-Hua Yang, I-Tsong Huang, Chin-Hui Lin, Tren-Yi Chen, Li-Kuang Chen

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.6field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
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  6. Review
  7. Representative Genotyping, Recombination and Evolutionary Dynamics Analysis ofFrontiers in cellular and infection microbiology · 2020
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  8. Molecular characterization ofNew microbes and new infections · 2019
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  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. The Re-Emergence and Emergence of Vector-Borne Rickettsioses in Taiwan.Tropical medicine and infectious disease · 2017
    Review
  15. Article
  16. Article
  17. Scrub typhus: risks, diagnostic issues, and management challenges.Research and reports in tropical medicine · 2017
    Review
  18. Article
  19. Rapid Increase in Scrub Typhus Incidence in Mainland China, 2006-2014.The American journal of tropical medicine and hygiene · 2016
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Hui-Hua YangInstitute of Medical Sciences, Tzu Chi University, Hualien, Taiwan.
I-Tsong Huang
Chin-Hui Lin
Tren-Yi Chen
Li-Kuang Chen
Tzu Chi University · TWBuddhist Tzu Chi General Hospital · TWChung Shan Medical University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Scrub typhus, an acute febrile illness, is caused by the obligate intracellular bacterium Orientia tsutsugamushi. In our study, O. tsutsugamushi was rapidly detected and typed by polymerase chain reaction (PCR) and restriction fragment length polymorphism (RFLP) analysis of the 56-kDa type-specific antigen (TSA) gene. To investigate the genotypes of clinical variants of O. tsutsugamushi, we collected 3223 blood samples from eastern Taiwanese patients with suspected scrub typhus from 2002 to 2008. In total, 505 samples were found to be positive for scrub typhus infection by PCR, and bacteria were isolated from 282 of them. Four prototype genotype strains (Karp, Kato, Kawasaki and Gilliam) and eleven different Taiwanese genotype isolates (Taiwan-A, -B, -C, -D, -E, -G, -H, -J, -N, -O and -P) were identified by RPLF analysis. Taiwan-H, the major genotype in eastern Taiwan, exhibited prevalence and isolation rates of 47.3% (239/505) and 42.6% (120/282), respectively. We also assessed the genetic relatedness of the 56-kDa TSA gene among eight Taiwan-H isolates, thirteen other Taiwanese isolates and 104 DNA sequences deposited in the GenBank database using MEGA version 5.0 and PHYLIP version 3.66. We found that the Taiwan-H isolates formed into a new cluster, which was designated the Taiwan Gilliam-variant (TG-v) cluster to distinguish it from the Japanese Gilliam-variant (JG-v) cluster. According to Simplot analysis, TG-v is a new recombinant strain among Gilliam, Ikeda and Kato. Moreover, the Gilliam-Kawasaki cluster had the highest percentage of RFLP cases and was the most frequently isolated type in eastern Taiwan (50.1%, 253/505; 44.0%, 124/282). These findings shed light on the genetic evolution of O. tsutsugamushi into different strains and may be useful in vaccine development and epidemic disease control in the future.

Indexed as

Antigens, BacterialBacterial ProteinsGenotypeHumansMembrane ProteinsMolecular Sequence DataMolecular TypingOrientia tsutsugamushiPhylogenyPolymerase Chain ReactionPolymorphism, Restriction Fragment LengthRecombination, GeneticScrub TyphusTaiwanAntigens, BacterialBacterial ProteinsMembrane ProteinsSta56 antigen, Rickettsia tsutsugamushi

Identifiers

PMID23071693
PMCPMC3468442
OpenAlexW1984196675

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.