Evidence map›Paper›PMID 23071648›Full record

ArticlePloS one2012

Evolutionary history of contagious bovine pleuropneumonia using next generation sequencing of Mycoplasma mycoides Subsp. mycoides "Small Colony".

Virginie Dupuy, Lucía Manso-Silván, Valérie Barbe, Patricia Thebault, Emilie Dordet-Frisoni, Christine Citti, François Poumarat, Alain Blanchard, Marc Breton, Pascal Sirand-Pugnet and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.0field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Contagious Bovine Pleuropneumonia: A Passage to India.Animals : an open access journal from MDPI · 2023
    Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. An outbreak of Mycoplasma mycoides subspecies capri arthritis in young goats: a case study.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2019
    Article
  10. Multilocus Sequence Analysis Reveals Three Distinct Populations of "Applied and environmental microbiology · 2019
    Article
  11. A review of mycoplasma diagnostics in cattle.Journal of veterinary internal medicine · 2018
    Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Virginie DupuyCentre International de Recherche en Agronomie pour le Développement, UMR CMAEE, Montpellier, France.
Lucía Manso-Silván
Valérie Barbe
Patricia Thebault
Emilie Dordet-Frisoni
Christine Citti
François Poumarat
Alain Blanchard
Marc Breton
Pascal Sirand-Pugnet
François Thiaucourt
Université de Bordeaux · FRCentre de Coopération Internationale en Recherche Agronomique pour le Développement · FRÉcole Nationale Vétérinaire de Toulouse · FRGenoscope · FRMycoplasmoses animales

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mycoplasma mycoides subsp. mycoides "Small Colony" (MmmSC) is responsible for contagious bovine pleuropneumonia (CBPP) in bovidae, a notifiable disease to the World Organization for Animal Health (OIE). Although its origin is not documented, the disease was known in Europe in 1773. It reached nearly world-wide distribution in the 19(th) century through the cattle trade and was eradicated from most continents by stamping-out policies. During the 20(th) century it persisted in Africa, and it reappeared sporadically in Southern Europe. Yet, classical epidemiology studies failed to explain the re-occurrence of the disease in Europe in the 1990s. The objectives of this study were to obtain a precise phylogeny of this pathogen, reconstruct its evolutionary history, estimate the date of its emergence, and determine the origin of the most recent European outbreaks. A large-scale genomic approach based on next-generation sequencing technologies was applied to construct a robust phylogeny of this extremely monomorphic pathogen by using 20 representative strains of various geographical origins. Sixty two polymorphic genes of the MmmSC core genome were selected, representing 83601 bp in total and resulting in 139 SNPs within the 20 strains. A robust phylogeny was obtained that identified a lineage specific to European strains; African strains were scattered in various branches. Bayesian analysis allowed dating the most recent common ancestor for MmmSC around 1700. The strains circulating in Sub-Saharan Africa today, however, were shown to descend from a strain that existed around 1810. MmmSC emerged recently, about 300 years ago, and was most probably exported from Europe to other continents, including Africa, during the 19(th) century. Its diversity is now greater in Africa, where CBPP is enzootic, than in Europe, where outbreaks occurred sporadically until 1999 and where CBPP may now be considered eradicated unless MmmSC remains undetected.

Indexed as

AfricaAnimalsBase SequenceBayes TheoremCattleCattle DiseasesDisease OutbreaksDNA, BacterialEuropeEvolution, MolecularGenetic VariationGenome, BacterialGeographyMolecular Sequence DataMycoplasma mycoidesPhylogenyDNA, Bacterial

Identifiers

PMID23071648
PMCPMC3468273
OpenAlexW2058283969

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.