Evidence map›Paper›PMID 23071641›Full record

ArticlePloS one2012

Double domain swapping in bovine seminal RNase: formation of distinct N- and C-swapped tetramers and multimers with increasing biological activities.

Giovanni Gotte, Alexander Mahmoud Helmy, Carmine Ercole, Roberta Spadaccini, Douglas V Laurents, Massimo Donadelli, Delia Picone

Abstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Structure of angiogenin dimer bound to double-stranded RNA.Acta crystallographica. Section F, Structural biology communications · 2022
    Article
  2. Emerging biological functions of ribonuclease 1 and angiogenin.Critical reviews in biochemistry and molecular biology · 2022
    Review
  3. Article
  4. Unveiling the dimer/monomer propensities of Smad MH1-DNA complexes.Computational and structural biotechnology journal · 2021
    Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Amino-acid composition after loop deletion drives domain swapping.Protein science : a publication of the Protein Society · 2017
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Giovanni GotteDipartimento di Scienze della Vita e della Riproduzione, Sezione di Chimica Biologica, Università degli Studi di Verona, Verona, Italy. giovanni.gotte@univr.it
Alexander Mahmoud Helmy
Carmine Ercole
Roberta Spadaccini
Douglas V Laurents
Massimo Donadelli
Delia Picone

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bovine seminal (BS) RNase, the unique natively dimeric member of the RNase super-family, represents a special case not only for its additional biological actions but also for the singular features of 3D domain swapping. The native enzyme is indeed a mixture of two isoforms: M = M, a dimer held together by two inter-subunit disulfide bonds, and MxM, 70% of the total, which, besides the two mentioned disulfides, is additionally stabilized by the swapping of its N-termini.When lyophilized from 40% acetic acid, BS-RNase oligomerizes as the super-family proto-type RNase A does. In this paper, we induced BS-RNase self-association and analyzed the multimers by size-exclusion chromatography, cross-linking, electrophoresis, mutagenesis, dynamic light scattering, molecular modelling. Finally, we evaluated their enzymatic and cytotoxic activities.Several BS-RNase domain-swapped oligomers were detected, including two tetramers, one exchanging only the N-termini, the other being either N- or C-swapped. The C-swapping event, confirmed by results on a BS-K113N mutant, has been firstly seen in BS-RNase here, and probably stabilizes also multimers larger than tetramers.Interestingly, all BS-RNase oligomers are more enzymatically active than the native dimer and, above all, they display a cytotoxic activity that definitely increases with the molecular weight of the multimers. This latter feature, to date unknown for BS-RNase, suggests again that the self-association of RNases strongly modulates their biological and potentially therapeutic properties.

Indexed as

Models, MolecularProtein MultimerizationProtein Structure, TertiaryAcetic AcidAnimalsAntineoplastic AgentsCattleCells, CulturedCell SurvivalChromatography, GelCross-Linking ReagentsDinitrofluorobenzeneDisulfidesElectrophoresis, Polyacrylamide GelEndoribonucleasesEnzyme Stability1,5-difluoro-2,4-dinitrobenzeneAcetic AcidAntineoplastic AgentsCross-Linking ReagentsDinitrofluorobenzeneDisulfidesEndoribonucleasesPoly A-Uribonuclease SPL

Identifiers

PMID23071641
PMCPMC3469567

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.