Evidence map›Paper›PMID 23070168›Full record

ArticleAntimicrobial agents and chemotherapy2013

Complete sequence of pJIE186-2, a plasmid carrying multiple virulence factors from a sequence type 131 Escherichia coli O25 strain.

Zhiyong Zong

Abstract readCase Reports
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Analysis of completeMicrobial genomics · 2020
    Article
  3. Review
  4. Article
  5. F1000Research · 2017
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Escherichia coli ST131, an intriguing clonal group.Clinical microbiology reviews · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Zhiyong ZongCenter of Infectious Diseases, West China Hospital, Sichuan University, and Division of Infectious Diseases, the State Key Laboratory of Biotherapy, Sichuan University, Chengdu, China. zongzhiy@scu.edu.cn

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The complete sequence of a 137-kb plasmid, pJIE186-2, from a sequence type 131 (ST131) Escherichia coli strain was determined. pJIE186-2 contained IncF replicons (FIB, FIIA, and FIAΔ), an incomplete conjugative region, and multiple virulence factors (sitABCD, iucABCD-iutA, iroCDEN, etsABC, hlyF, iss, ompT, and vagCD) but no antimicrobial resistance genes. The host strain also had another plasmid, pJIE186-1, carrying multiple resistance genes. The two plasmids conferred selective advantages for the host strain, contributing to the recent emergence of ST131 E. coli.

Indexed as

PlasmidsAustraliaBacterial Typing TechniquesBase SequenceDrug Resistance, Multiple, BacterialEscherichia coliEscherichia coli InfectionsHigh-Throughput Nucleotide SequencingHumansMolecular Sequence DataRepliconSelection, GeneticSequence Analysis, DNAVirulence FactorsVirulence Factors

Identifiers

PMID23070168
PMCPMC3535984

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.