Evidence map›Paper›PMID 23068886›Full record

ArticleVirology2013

Connection subdomain mutations in HIV-1 subtype-C treatment-experienced patients enhance NRTI and NNRTI drug resistance.

Krista A Delviks-Frankenberry, Renan B Lengruber, Andre F Santos, Jussara M Silveira, Marcelo A Soares, Mary F Kearney, Frank Maldarelli, Vinay K Pathak

Abstract read
In one paragraph

Article in Virology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 12 citations in OpenAlex.

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  7. Review
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  12. Extensive variation in drug-resistance mutational profile of Brazilian patients failing antiretroviral therapy in five large Brazilian cities.The Brazilian journal of infectious diseases : an official publication of the Brazilian Society of Infectious Diseases
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Krista A Delviks-FrankenberryViral Mutation Section, HIV Drug Resistance Program, Frederick National Laboratory for Cancer Research, Frederick, MD 21702, USA. frankenk@mail.nih.gov
Renan B Lengruber
Andre F Santos
Jussara M Silveira
Marcelo A Soares
Mary F Kearney
Frank Maldarelli
Vinay K Pathak
Frederick National Laboratory for Cancer Research · USUniversidade Federal do Rio de Janeiro · BRUniversidade Federal do Rio Grande · BR

Funding

Viral Replication and Interactions with Host FactorsZIABC011436 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI PATHAK, VINAY K. · 2012 to 2025
$12.2M
Role of Connection and RNase H Domains of HIV-1 RT in Antiviral Drug ResistanceZ01BC010532 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI PATHAK, VINAY K. · 2003 to 2008
$1.1M
Structural Determinants of RT That Influence Fidelity ofZ01BC010533 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI PATHAK, VINAY K. · 2003 to 2008
$233k
Intramural NIH HHS Z01 BC010532Intramural NIH HHS Z01 BC010533
6 · The paper itself

Abstract

Mutations in the connection subdomain (CN) and RNase H domain (RH) of HIV-1 reverse transcriptase (RT) from subtype B-infected patients enhance nucleoside and nonnucleoside RT inhibitor (NRTI and NNRTI) resistance by affecting the balance between polymerization and RNase H activity. To determine whether CN mutations in subtype C influence drug sensitivity, single genome sequencing was performed on Brazilian subtype C-infected patients failing RTI therapy. CN mutations identified were similar to subtype B, including A376S, A400T, Q334D, G335D, N348I, and A371V, and increased AZT resistance in the presence of thymidine analog mutations. CN mutations also enhanced NNRTI resistance in the presence of classical NNRTI mutations: etravirine resistance was enhanced 6- to 11-fold in the presence of L100I/K103N/Y181C. These results indicate that selection of CN mutations in treatment-experienced patients also occurs in subtype-C-infected patients and are likely to provide valuable information in predicting clinical RTI resistance.

Indexed as

MutationAmino Acid SequenceAnti-HIV AgentsBrazilCell LineDrug Resistance, ViralHIV-1HIV InfectionsHIV Reverse TranscriptaseHumansMolecular Sequence DataNitrilesProtein Structure, TertiaryPyridazinesPyrimidinesReverse Transcriptase InhibitorsAnti-HIV AgentsetravirineHIV Reverse TranscriptaseNitrilesPyridazinesPyrimidinesreverse transcriptase, Human immunodeficiency virus 1Reverse Transcriptase InhibitorsZidovudine

Identifiers

PMID23068886
PMCPMC3534945
OpenAlexW2028566380

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.