Evidence map›Paper›PMID 23067336›Full record

ArticleHelicobacter2013

Intact long-type dupA as a marker for gastroduodenal diseases in Okinawan subpopulation, Japan.

Ayaka Takahashi, Seiji Shiota, Osamu Matsunari, Masahide Watada, Rumiko Suzuki, Saori Nakachi, Nagisa Kinjo, Fukunori Kinjo, Yoshio Yamaoka

Abstract read
In one paragraph

Article in Helicobacter, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
5.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 39 citations in OpenAlex.

  1. Pooled it
  2. Evaluation of theAnti-cancer agents in medicinal chemistry · 2025
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  3. Frontiers in cellular and infection microbiology · 2023
    Article
  4. Review
  5. Frontiers in microbiology · 2022
    Review
  6. Overview ofGut and liver · 2021
    Review
  7. Article
  8. Cells · 2020
    Review
  9. Novel virulence factorWorld journal of gastroenterology · 2020
    Review
  10. Review
  11. Review
  12. Role ofWorld journal of gastroenterology · 2016
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Helicobacter pylori virulence and cancer pathogenesis.Future oncology (London, England) · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Ayaka TakahashiDepartment of Environmental and Preventive Medicine, Faculty of Medicine, Oita University, Yufu, 879-5569, Japan.
Seiji Shiota
Osamu Matsunari
Masahide Watada
Rumiko Suzuki
Saori Nakachi
Nagisa Kinjo
Fukunori Kinjo
Yoshio Yamaoka
Oita University · JPUniversity of the Ryukyus · JPBaylor College of Medicine · US

Funding

REGULATION OF CXC CHEMOKINE EXPRESSION BY H. PYLORIR01DK062813 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI YAMAOKA, YOSHIO · 2004 to 2013
$3.0M
NIDDK NIH HHS DK62813NIDDK NIH HHS R01 DK062813
6 · The paper itself

Abstract

backgroundHelicobacter pylori dupA can be divided into two types according to the presence or absence of the mutation. In addition, full-sequenced data revealed that dupA has two types with different lengths depend on the presence of approximately 600 bp in the putative 5' region (presence; long-type and absence; short-type), which has not been taken into account in previous studies.

methodsA total of 319 strains isolated from Okinawa, the south islands of Japan, were included. The status of dupA and cagA was determined by polymerase chain reaction. The presence of mutations in long-type dupA was determined by DNA sequencing.

resultsThe prevalence of long-type dupA was 26.3% (84/319). Sequence analysis showed that there were only six cases (7.1%) with point mutations lead to stop codon among 84 long-type dupA strains studied. Interestingly, intact long-type dupA without frameshift mutation, but not short-type dupA, was significantly associated with gastric ulcer and gastric cancer than gastritis (p = .001 and p = .019, respectively). After adjustment by age, gender, and cagA, the presence of intact long-type dupA was significantly associated with gastric ulcer and gastric cancer compared with gastritis (odds ratio [OR] = 3.35, 95% confidence interval [CI] = 1.55-7.24 and OR = 4.14, 95% CI = 1.23-13.94, respectively).

conclusionsIntact long-type dupA is a real virulence marker for severe outcomes in Okinawa, Japan. The previous information gained from PCR-based methods without taking long-type dupA into account must be interpreted with caution.

Indexed as

AdultAgedAntigens, BacterialBacterial ProteinsDNA, BacterialFemaleGastritisGenetic MarkersHelicobacter InfectionsHelicobacter pyloriHumansJapanMaleMiddle AgedPolymerase Chain ReactionSequence Analysis, DNAAntigens, BacterialBacterial ProteinscagA protein, Helicobacter pyloriDNA, BacterialDupA protein, Helicobacter pyloriGenetic MarkersVirulence Factors

Identifiers

PMID23067336
PMCPMC3545078
OpenAlexW2125839397

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.