Evidence map›Paper›PMID 23064749›Full record

ArticleGenome research2013

Evolutionary dynamism of the primate LRRC37 gene family.

Giuliana Giannuzzi, Priscillia Siswara, Maika Malig, Tomas Marques-Bonet, NISC Comparative Sequencing Program, James C Mullikin, Mario Ventura, Evan E Eichler

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 59 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Transcriptomic Analysis of the Human Habenula in Schizophrenia.The American journal of psychiatry · 2025
    Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Genome research · 2024
    Article
  11. Review
  12. Article
  13. Genes · 2023
    Article
  14. Article
  15. Identifying Biomarkers Using Support Vector Machine to Understand the Racial Disparity in Triple-Negative Breast Cancer.Journal of computational biology : a journal of computational molecular cell biology · 2023
    Article
  16. Article
  17. Article
  18. Differential regulation ofEpigenetics · 2022
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Giuliana GiannuzziDipartimento di Biologia, Università degli Studi di Bari Aldo Moro, Bari 70126, Italy.
Priscillia Siswara
Maika Malig
Tomas Marques-Bonet
NISC Comparative Sequencing Program
James C Mullikin
Mario Ventura
Evan E Eichler
University of Washington · USHoward Hughes Medical Institute · USNational Human Genome Research Institute · USUniversitat Pompeu Fabra · ESUniversity of Bari Aldo Moro · IT

Funding

Inter- and Intra-Species Comparative SequencingZIBHG000196 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI THOMAS, JAMES · 2009 to 2025
$177.6M
Comparative Genomics Unit ResearchZIAHG200330 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI MULLIKIN, JAMES C · 2009 to 2022
$17.9M
Sequence and Assembly of Segmental DuplicationsR01HG002385 · NHGRI · UNIVERSITY OF WASHINGTON · PI Evan Eichler · 2001 to 2026
$13.3M
MECHANISM &INSTABILITY OF PERICENTROMERIC DUPLICATIONSR01GM058815 · NIGMS · UNIVERSITY OF WASHINGTON · PI EICHLER, EVAN · 1999 to 2010
$2.9M
Howard Hughes Medical InstituteIntramural NIH HHSNHGRI NIH HHS HG002385NHGRI NIH HHS R01 HG002385NIGMS NIH HHS GM058815NIGMS NIH HHS R01 GM058815
6 · The paper itself

Abstract

Core duplicons in the human genome represent ancestral duplication modules shared by the majority of intrachromosomal duplication blocks within a given chromosome. These cores are associated with the emergence of novel gene families in the hominoid lineage, but their genomic organization and gene characterization among other primates are largely unknown. Here, we investigate the genomic organization and expression of the core duplicon on chromosome 17 that led to the expansion of LRRC37 during primate evolution. A comparison of the LRRC37 gene family organization in human, orangutan, macaque, marmoset, and lemur genomes shows the presence of both orthologous and species-specific gene copies in all primate lineages. Expression profiling in mouse, macaque, and human tissues reveals that the ancestral expression of LRRC37 was restricted to the testis. In the hominid lineage, the pattern of LRRC37 became increasingly ubiquitous, with significantly higher levels of expression in the cerebellum and thymus, and showed a remarkable diversity of alternative splice forms. Transfection studies in HeLa cells indicate that the human FLAG-tagged recombinant LRRC37 protein is secreted after cleavage of a transmembrane precursor and its overexpression can induce filipodia formation.

Indexed as

Evolution, MolecularAlternative SplicingAnimalsBase SequenceCerebellumChromosomes, MammalianDNAGene DuplicationGene Expression ProfilingGenomeHeLa CellsHumansLeucine-Rich Repeat ProteinsMaleMiceMolecular Sequence DataDNALeucine-Rich Repeat ProteinsProteins

Identifiers

PMID23064749
PMCPMC3530683
OpenAlexW2149388376

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.