Evidence map›Paper›PMID 23064647›Full record

ArticleNature structural & molecular biology2012

Crystal structure of human CDC7 kinase in complex with its activator DBF4.

Siobhan Hughes, Frédéric Elustondo, Andrea Di Fonzo, Frédéric G Leroux, Ai C Wong, Ambrosius P Snijders, Stephen J Matthews, Peter Cherepanov

Abstract read
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In one paragraph

Article in Nature structural & molecular biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 76 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Druggable cavities and allosteric modulators of the cell division cycle 7 (CDC7) kinase.Journal of enzyme inhibition and medicinal chemistry · 2024
    Article
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  7. A Structural andACS omega · 2023
    Article
  8. Article
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  11. Article
  12. The yeast Dbf4 ZnCurrent genetics · 2022
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  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Siobhan HughesCancer Research UK, London Research Institute, Clare Hall Laboratories, Potters Bar, UK.
Frédéric Elustondo
Andrea Di Fonzo
Frédéric G Leroux
Ai C Wong
Ambrosius P Snijders
Stephen J Matthews
Peter Cherepanov
Cancer Research UK · GBImperial College London · GB

Funding

Cancer Research UKMedical Research Council G0900116
6 · The paper itself

Abstract

CDC7 is a serine/threonine kinase that is essential for the initiation of eukaryotic DNA replication. CDC7 activity is controlled by its activator, DBF4. Here we present crystal structures of human CDC7-DBF4 in complex with a nucleotide or ATP-competing small molecules, revealing the active and inhibited forms of the kinase, respectively. DBF4 wraps around CDC7, burying approximately 6,000 Å(2) of hydrophobic molecular surface in a bipartite interface. The effector domain of DBF4, containing conserved motif C, is essential and sufficient to support CDC7 kinase activity by binding to the kinase N-terminal lobe and stabilizing its canonical αC helix. DBF4 motif M latches onto the C-terminal lobe of the kinase, acting as a tethering domain. Our results elucidate the structural basis for binding to and activation of CDC7 by DBF4 and provide a framework for the design of more potent and specific CDC7 inhibitors.

Indexed as

Models, MolecularProtein ConformationAmino Acid SequenceCell Cycle ProteinsCrystallizationHumansMagnetic Resonance SpectroscopyMolecular Sequence DataMultiprotein ComplexesProtein Serine-Threonine KinasesX-Ray DiffractionCDC7 protein, humanCell Cycle ProteinsDBF4 protein, humanMultiprotein ComplexesProtein Serine-Threonine Kinases

Identifiers

PMID23064647
OpenAlexW2017610457

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.