ArticlePlant cell reports2013
Identification of QTLs associated with tissue culture response through sequencing-based genotyping of RILs derived from 93-11 × Nipponbare in rice (Oryza sativa).
Article in Plant cell reports, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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Who cites it
18 citing papers in PubMed, 27 citations in OpenAlex.
- A Cyclin Gene OsCYCB1;5 Regulates Seed Callus Induction in Rice Revealed by Genome Wide Association Study.Rice (New York, N.Y.) · 2024Article
- Identification of QTLs responsible for culturability, and fine-mapping of QTLMolecular breeding : new strategies in plant improvement · 2024Article
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- GWAS across multiple environments and WGCNA suggest the involvement of ZmARF23 in embryonic callus induction from immature maize embryos.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Mapping quantitative trait loci associated with callus browning in Dongxiang common wild rice (Oryza rufipogon Griff.).Molecular biology reports · 2023Article
- QTLs Related to Rice Callus Regeneration Ability: Localization and Effect Verification ofCells · 2022Article
- GhTCE1-GhTCEE1 dimers regulate transcriptional reprogramming during wound-induced callus formation in cotton.The Plant cell · 2022Article
- Combined QTL Mapping across Multiple Environments and Co-Expression Network Analysis Identified Key Genes for Embryogenic Callus Induction from Immature Maize Embryos.International journal of molecular sciences · 2022Article
- Identification and candidate gene screening of qCIR9.1, a novel QTL associated with anther culturability in rice (Oryza sativa L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Natural Variation in Plant Pluripotency and Regeneration.Plants (Basel, Switzerland) · 2020Review
- Comparative Analysis of In Vitro Responses and Regeneration between Diverse Bioenergy Sorghum Genotypes.Plants (Basel, Switzerland) · 2020Article
- A common wild rice-derived BOC1 allele reduces callus browning in indica rice transformation.Nature communications · 2020Article
- Article
- Genetic analysis and identification of a candidate gene associated with in vitro regeneration ability of cucumber.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018Article
- Article
- Development and molecular characterization of a doubled haploid population derived from a hybrid betweenBreeding science · 2016Article
- Identification of QTLs associated with tissue culture response of mature wheat embryos.SpringerPlus · 2016Article
- Development and GBS-genotyping of introgression lines (ILs) using two wild species of rice,Molecular breeding : new strategies in plant improvementArticle
Corrections and comments
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Authors and funding
8 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
key messageThe performance of callus induction and callus differentiation was evaluated by 9 indices for 140 RILs; 2 major QTLs associated with plant regeneration were identified. In order to investigate the genetic mechanisms of tissue culture response, 140 recombinant inbred lines (RILs) derived from 93-11 (Oryza sativa ssp. indica) × Nipponbare (Oryza sativa ssp. japonica) and a high quality genetic map based on the SNPs generated from deep sequencing of the RIL genomes, were used to identify the quantitative trait loci (QTLs) associated with in vitro tissue culture response (TCR) from mature seed in rice. The performance of callus induction was evaluated by indices of induced-callus color (ICC), induced-callus size (ICS), induced-callus friability (ICF) and callus induction rate (CIR), respectively, and the performance of callus differentiation was evaluated by indices of callus proliferation ability (CPA), callus browning tendency (CBT), callus greening ability (CGA), the average number of regenerated shoots per callus (NRS) and regeneration rate (%, RR), respectively. A total of 25 QTLs, 2 each for ICC, ICS, ICF, CIR and CBA, 3 for CPA, 4 each for CGA, NRS and RR, respectively, were detected and located on 8 rice chromosomes. Significant correlations were observed among the traits of CGA, NRS and RR, and QTLs identified for these three indices were co-located on chromosomes 3 and 7, and the additive effects came from both Nipponbare and 93-11, respectively. The results obtained from this study provide guidance for further fine mapping and gene cloning of the major QTL of TCR and the knowledge of the genes underlying the traits investigated would be very helpful for revealing the molecular bases of tissue culture response.
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