Evidence map›Paper›PMID 23064322›Full record

ArticleThe Plant cell2012

Agrobacterium may delay plant nonhomologous end-joining DNA repair via XRCC4 to favor T-DNA integration.

Zarir E Vaghchhipawala, Balaji Vasudevan, Seonghee Lee, Mustafa R Morsy, Kirankumar S Mysore

Open access · greenAbstract read
In one paragraph

Article in The Plant cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Plant DNA Repair andInternational journal of molecular sciences · 2021
    Review
  7. Article
  8. Biodesign research · 2020
    Review
  9. Frontiers in plant science · 2020
    Article
  10. Article
  11. Pathways of DNA Transfer to Plants fromAnnual review of phytopathology · 2019
    Article
  12. Screening internal controls for expression analyses involving numerous treatments by combining statistical methods with reference gene selection tools.Physiology and molecular biology of plants : an international journal of functional plant biology · 2019
    Article
  13. Review
  14. Article
  15. Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Zarir E VaghchhipawalaPlant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, Oklahoma 73401, USA.
Balaji Vasudevan
Seonghee Lee
Mustafa R Morsy
Kirankumar S Mysore
Noble Research Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Agrobacterium tumefaciens is a soilborne pathogen that causes crown gall disease in many dicotyledonous plants by transfer of a portion of its tumor-inducing plasmid (T-DNA) into the plant genome. Several plant factors that play a role in Agrobacterium attachment to plant cells and transport of T-DNA to the nucleus have been identified, but the T-DNA integration step during transformation is poorly understood and has been proposed to occur via nonhomologous end-joining (NHEJ)-mediated double-strand DNA break (DSB) repair. Here, we report a negative role of X-ray cross complementation group4 (XRCC4), one of the key proteins required for NHEJ, in Agrobacterium T-DNA integration. Downregulation of XRCC4 in Arabidopsis and Nicotiana benthamiana increased stable transformation due to increased T-DNA integration. Overexpression of XRCC4 in Arabidopsis decreased stable transformation due to decreased T-DNA integration. Interestingly, XRCC4 directly interacted with Agrobacterium protein VirE2 in a yeast two-hybrid system and in planta. VirE2-expressing Arabidopsis plants were more susceptible to the DNA damaging chemical bleomycin and showed increased stable transformation. We hypothesize that VirE2 titrates or excludes active XRCC4 protein available for DSB repair, thus delaying the closure of DSBs in the chromosome, providing greater opportunity for T-DNA to integrate.

Indexed as

DNA End-Joining RepairAgrobacterium tumefaciensArabidopsisArabidopsis ProteinsBacterial ProteinsBleomycinDNA, BacterialDNA-Binding ProteinsDNA Breaks, Double-StrandedDNA RepairDown-RegulationGene SilencingGenome, PlantIon ChannelsMolecular Sequence DataNicotianaArabidopsis ProteinsBacterial ProteinsBleomycinDNA, BacterialDNA-Binding ProteinsIon ChannelsPlant ProteinsvirE2 protein, AgrobacteriumXRCC4 protein, Arabidopsis

Identifiers

PMID23064322
PMCPMC3517239
OpenAlexW2156753622

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.