Evidence map›Paper›PMID 23063585›Full record

ArticleTranslational research : the journal of laboratory and clinical medicine2013

Assessment of FANCD2 nuclear foci formation in paraffin-embedded tumors: a potential patient-enrichment strategy for treatment with DNA interstrand crosslinking agents.

Wenrui Duan, Li Gao, Weiqiang Zhao, Marino Leon, Wolfgang Sadee, Amy Webb, Kimberly Resnick, Xin Wu, Bhuvaneswari Ramaswamy, David E Cohn and 4 more

Open access · greenAbstract read
In one paragraph

Article in Translational research : the journal of laboratory and clinical medicine, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. [Research progress of Fanconi anemia and DNA interstrand crosslink repair].Zhonghua xue ye xue za zhi = Zhonghua xueyexue zazhi · 2022
    Article
  4. Article
  5. Article
  6. Review
  7. The Fanconi Anemia Pathway in Cancer.Annual review of cancer biology · 2019
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. FANCD2 is a potential therapeutic target and biomarker in alveolar rhabdomyosarcoma harboring the PAX3-FOXO1 fusion gene.Clinical cancer research : an official journal of the American Association for Cancer Research · 2014
    Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Wenrui DuanComprehensive Cancer Center, Division of Medical Oncology, The Ohio State University College of Medicine and Public Health, Columbus, Ohio, USA.
Li Gao
Weiqiang Zhao
Marino Leon
Wolfgang Sadee
Amy Webb
Kimberly Resnick
Xin Wu
Bhuvaneswari Ramaswamy
David E Cohn
Charles Shapiro
Paul R Andreassen
Gregory A Otterson
Miguel A Villalona-Calero
The Ohio State University · USUniversity of Cincinnati Medical Center · US

Funding

Expression Genetics in Drug TherapyU01GM092655 · NIGMS · OHIO STATE UNIVERSITY · PI SADEE, WOLFGANG · 2010 to 2014
$8.6M
The Ohio State University Center for Clinical and Translational Science (UL1)UL1TR000090 · NCATS · OHIO STATE UNIVERSITY · PI JACKSON, REBECCA D · 2012 to 2013
$7.9M
Targeting Somatic Homologous Recombination in Solid TumorsR01CA152101 · NCI · OHIO STATE UNIVERSITY · PI VILLALONA, MIGUEL A · 2010 to 2014
$2.3M
Discovery of Homologous Recombination DNA Repair Deficiency in Lung TumorR21CA181291 · NCI · OHIO STATE UNIVERSITY · PI DUAN, WENRUI · 2014 to 2015
$368k
NCATS NIH HHS UL1 TR000090NCI NIH HHS N01 CM062207NCI NIH HHS R01 CA152101NCI NIH HHS R01CA152101NCI NIH HHS R21 CA181291NIGMS NIH HHS GM092655NIGMS NIH HHS U01 GM092655
6 · The paper itself

Abstract

A major mechanism of DNA repair related to homologous recombination is the Fanconi anemia (FA) pathway. FA genes collaborate with BRCA genes to form foci of DNA repair on chromatin after DNA damage or during the S phase of the cell cycle. Our goal was to develop a method capable of evaluating the functional status of the pathway in patients' tumor tissue, which could also be practically incorporated into large-scale screening. To develop this method, we first used Western immunoblot to detect FANCD2 protein monoubiquitination in fresh tumor specimens of patients with ovarian cancer undergoing surgery and stained formalin-fixed paraffin-embedded tumor tissue simultaneously with 4',6-diamidino-2-phenylindole, FANCD2, and Ki67 antibodies, eventually extending this method to other solid tumors. This triple stain permitted evaluation of the presence, or lack thereof, of FANCD2 subnuclear repair foci in proliferating cells by immunofluorescence microscopy. Overall, we evaluated 156 formalin-fixed paraffin-embedded tumor samples using the FA triple-staining immunofluorescence method. The ratios of FANCD2 foci-negative tumors in ovarian, lung, and breast tumor samples were 21%, 20%, and 29.4%, respectively. Our studies have led to the development of a suitable method for screening, capable of identifying tumors with somatic functional defects in the FA pathway. The use of paraffin-embedded tissues renders the reported method suitable for large-scale screening to select patients for treatment with DNA interstrand crosslinking agents, poly ADP-ribose polymerase inhibitors, or their combination.

Indexed as

Breast NeoplasmsCell LineCell NucleusCross-Linking ReagentsDNA RepairEnzyme InhibitorsFanconi AnemiaFanconi Anemia Complementation Group D2 ProteinFemaleHumansImmunohistochemistryLung NeoplasmsNeoplasmsOvarian NeoplasmsParaffin EmbeddingPoly(ADP-ribose) Polymerase InhibitorsCross-Linking ReagentsEnzyme InhibitorsFANCD2 protein, humanFanconi Anemia Complementation Group D2 ProteinPoly(ADP-ribose) Polymerase Inhibitors

Identifiers

PMID23063585
PMCPMC3755957
OpenAlexW2075865728

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.