Evidence map›Paper›PMID 23063120›Full record

ArticleCell2012

Pathogenic simian immunodeficiency virus infection is associated with expansion of the enteric virome.

Scott A Handley, Larissa B Thackray, Guoyan Zhao, Rachel Presti, Andrew D Miller, Lindsay Droit, Peter Abbink, Lori F Maxfield, Amal Kambal, Erning Duan and 12 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 202 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
202citing papers in PubMed, 1 pooled it
13.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

202 citing papers in PubMed, 1 synthesis or guideline pooled it, 277 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. Review
  11. Identification of a novel neutralization epitope in rhesus AAVs.Molecular therapy. Methods & clinical development · 2024
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Old and Novel Enteric Parvoviruses of Dogs.Pathogens (Basel, Switzerland) · 2023
    Review
  20. Article

142 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

22 authors at 6 institutions in 1 country.

Scott A HandleyDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO 63110, USA.
Larissa B Thackray
Guoyan Zhao
Rachel Presti
Andrew D Miller
Lindsay Droit
Peter Abbink
Lori F Maxfield
Amal Kambal
Erning Duan
Kelly Stanley
Joshua Kramer
Sheila C Macri
Sallie R Permar
Joern E Schmitz
Keith Mansfield
Jason M Brenchley
Ronald S Veazey
Thaddeus S Stappenbeck
David Wang
Dan H Barouch
Herbert W Virgin
Washington University in St. Louis · USBeth Israel Deaconess Medical Center · USNew England Biolabs (United States) · USDuke Medical Center · USNational Institute of Allergy and Infectious Diseases · USTulane University · US

Funding

The impact of HIV viral diversity and cellular immunity on HIV pathogenesisP30AI060354 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI ROBERT A. PARKER · 2004 to 2026
$94.4M
Virology and Smallpox VaccinationsU54AI057160 · NIAID · WASHINGTON UNIVERSITY · PI RAY, RANJIT · 2003 to 2013
$80.9M
Preclinical Evaluation of Novel Adenovirus Prime-Boost HIV-1 VaccineU19AI078526 · NIAID · BETH ISRAEL DEACONESS MEDICAL CENTER · PI BAROUCH, DAN H. · 2008 to 2012
$44.0M
VirologyU19AI095985 · NIAID · BETH ISRAEL DEACONESS MEDICAL CENTER · PI BURTON, DENNIS R. · 2011 to 2015
$35.9M
Mechanisms of Immune Activation and Disease Progression in Animal ModelsZIAAI001029 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI BRENCHLEY, JASON · 2009 to 2025
$28.2M
New England Primate Research Center Base GrantP51OD011103 · OD · HARVARD MEDICAL SCHOOL · PI FLIER, JEFFREY S · 2012 to 2013
$24.7M
Preclinical Evaluation of Novel Adenovirus VectorsU19AI066305 · NIAID · BETH ISRAEL DEACONESS MEDICAL CENTER · PI GOUDSMIT, JAAP · 2005 to 2009
$19.8M
Novel Adenovirus Vaccine Vectors for HIV/SIVR01AI066924 · NIAID · BETH ISRAEL DEACONESS MEDICAL CENTER · PI BAROUCH, DAN H. · 2006 to 2010
$3.5M
Immune control of SIVagm replication in vivoR01AI065335 · NIAID · BETH ISRAEL DEACONESS MEDICAL CENTER · PI SCHMITZ, JOERN E. · 2006 to 2009
$2.9M
METAGENOMICS OF ENTERIC DISEASE IN SIV-INFECTED AND UNINFECTED MACAQUESR01OD011170 · OD · WASHINGTON UNIVERSITY · PI BAROUCH, DAN H., VIRGIN, HERBERT W · 2012 to 2014
$2.3M
METAGENOMICS OF ENTERIC DISEASE IN SIV-INFECTED AND UNINFECTED MACAQUESR01RR032309 · NCRR · WASHINGTON UNIVERSITY · PI BAROUCH, DAN H., VIRGIN, HERBERT W · 2011 to 2011
$806k
SIV-specific Immunity in breast milk during infection and after vaccinationK08AI087992 · NIAID · DUKE UNIVERSITY · PI PERMAR, SALLIE R. · 2009 to 2013
$568k
NCRR NIH HHS 1R01 RR032309NCRR NIH HHS R01 RR032309NIAID NIH HHS AI066305NIAID NIH HHS AI066924NIAID NIH HHS AI078526NIAID NIH HHS AI095985NIAID NIH HHS AI65335NIAID NIH HHS K08 AI087992NIAID NIH HHS P30 AI060354NIAID NIH HHS R01 AI065335NIAID NIH HHS R01 AI066924NIAID NIH HHS U19 AI066305NIAID NIH HHS U19 AI078526NIAID NIH HHS U19 AI095985NIAID NIH HHS U54 AI057160NIAID NIH HHS U54 AI057160-08NIH HHS 8P51OD011103-5NIH HHS OD11170-02NIH HHS P51 OD011103NIH HHS R01 OD011170
6 · The paper itself

Abstract

Pathogenic simian immunodeficiency virus (SIV) infection is associated with enteropathy, which likely contributes to AIDS progression. To identify candidate etiologies for AIDS enteropathy, we used next-generation sequencing to define the enteric virome during SIV infection in nonhuman primates. Pathogenic, but not nonpathogenic, SIV infection was associated with significant expansion of the enteric virome. We identified at least 32 previously undescribed enteric viruses during pathogenic SIV infection and confirmed their presence by using viral culture and PCR testing. We detected unsuspected mucosal adenovirus infection associated with enteritis as well as parvovirus viremia in animals with advanced AIDS, indicating the pathogenic potential of SIV-associated expansion of the enteric virome. No association between pathogenic SIV infection and the family-level taxonomy of enteric bacteria was detected. Thus, enteric viral infections may contribute to AIDS enteropathy and disease progression. These findings underline the importance of metagenomic analysis of the virome for understanding AIDS pathogenesis.

Indexed as

AnimalsCaliciviridaeChlorocebus aethiopsFecesIntestinesMolecular Sequence DataParvoviridaePhylogenyPicornaviridaePolymerase Chain ReactionSimian Acquired Immunodeficiency SyndromeSimian Immunodeficiency Virus

Identifiers

PMID23063120
PMCPMC3490196
OpenAlexW2154774779

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.