Evidence map›Paper›PMID 23062345›Full record

ArticleBiophysical journal2012

Direct observation of T4 lysozyme hinge-bending motion by fluorescence correlation spectroscopy.

Robel B Yirdaw, Hassane S McHaourab

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Robel B YirdawDepartment of Physics and Astronomy, Vanderbilt University, Nashville, TN, USA.
Hassane S McHaourab
Vanderbilt University · US

Funding

MOLECULAR BASIS OF LENS TRANSPARENCYR01EY012018 · NEI · VANDERBILT UNIVERSITY · PI MCHAOURAB, HASSANE S · 2003 to 2023
$10.4M
MOLECULAR BIOPHYSICS TRAINING PROGRAM AT VANDERBILTT32GM008320 · NIGMS · VANDERBILT UNIVERSITY · PI CHAZIN, WALTER J. · 1989 to 2023
$7.9M
TWO-PHOTON FCS SYSTEM: PROTEIN INTERACTION RESEARCHS10RR021208 · NCRR · VANDERBILT UNIVERSITY · PI PISTON, DAVID W. · 2005 to 2005
$406k
MOLECULAR BASIS OF LENS TRANSPARENCYR29EY012018 · NEI · VANDERBILT UNIVERSITY · PI MCHAOURAB, HASSANE S · 1998 to 2002
$291k
NCRR NIH HHS S10 RR021208NCRR NIH HHS S10RR21208NEI NIH HHS EY12018NEI NIH HHS R01 EY012018NEI NIH HHS R29 EY012018NIGMS NIH HHS T32 GM008320NIGMS NIH HHS T32-GM008320
6 · The paper itself

Abstract

Bacteriophage T4 Lysozyme (T4L) catalyzes the hydrolysis of the peptidoglycan layer of the bacterial cell wall late in the infection cycle. It has long been postulated that equilibrium dynamics enable substrate access to the active site located at the interface between the N- and C-terminal domains. Crystal structures of WT-T4L and point mutants captured a range of conformations that differ by the hinge-bending angle between the two domains. Evidence of equilibrium between open and closed conformations in solution was gleaned from distance measurements between the two domains but the nature of the equilibrium and the timescale of the underlying motion have not been investigated. Here, we used fluorescence fluctuation spectroscopy to directly detect T4L equilibrium conformational fluctuations in solution. For this purpose, Tetramethylrhodamine probes were introduced at pairs of cysteines in regions of the molecule that undergo relative displacement upon transition from open to closed conformations. Correlation analysis of Tetramethylrhodamine intensity fluctuations reveals hinge-bending motion that changes the relative distance and orientation of the N- and C-terminal domains with ≅ 15 μs relaxation time. That this motion involves interconversion between open and closed conformations was further confirmed by the dampening of its amplitude upon covalent substrate trapping. In contrast to the prevalent two-state model of T4L equilibrium, molecular brightness and number of particles obtained from cumulant analysis suggest that T4L populates multiple intermediate states, consistent with the wide range of hinge-bending angles trapped in the crystal structure of T4L mutants.

Indexed as

MovementBacteriophage T4KineticsMolecular Dynamics SimulationMuramidaseProtein Structure, SecondaryProtein Structure, TertiarySpectrometry, FluorescenceMuramidase

Identifiers

PMID23062345
PMCPMC3471472
OpenAlexW2010047075

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.