Evidence map›Paper›PMID 23062082›Full record

ArticleVirology journal2012

A divergent variant of Grapevine leafroll-associated virus 3 is present in California.

Yeemey Seah, Abhineet M Sharma, Siming Zhang, Rodrigo Pp Almeida, Siobain Duffy

Abstract read
In one paragraph

Article in Virology journal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Grapevine leafroll-associated virus 3.Frontiers in microbiology · 2013
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yeemey SeahDepartment of Ecology, Evolution and Natural Resources, School of Environmental and Biological Sciences, Rutgers the State University of New Jersey, 14 College Farm Rd, New Brunswick, NJ 08901, USA.
Abhineet M Sharma
Siming Zhang
Rodrigo Pp Almeida
Siobain Duffy

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGrapevine leafroll-associated viruses are a problem for grape production globally. Symptoms are caused by a number of distinct viral species. During a survey of Napa Valley vineyards (California, USA), we found evidence of a new variant of Grapevine leafroll-associated virus 3 (GLRaV-3). We isolated its genome from a symptomatic greenhouse-raised plant and fully sequenced it.

findingsIn a maximum likelihood analysis of representative GLRaV-3 gene sequences, the isolate grouped most closely with a recently sequenced variant from South Africa and a partial sequence from New Zealand. These highly divergent GLRaV-3 variants have predicted proteins that are more than 10% divergent from other GLRaV-3 variants, and appear to be missing an open reading frame for the p6 protein.

conclusionsThis divergent GLRaV-3 phylogroup is already present in grape-growing regions worldwide and is capable of causing symptoms of leafroll disease without the p6 protein.

Indexed as

Genetic VariationGenome, ViralSequence Analysis, DNACaliforniaClosteroviridaeCluster AnalysisMolecular Sequence DataPhylogenyPlant DiseasesRNA, ViralSequence Homology, Amino AcidViral ProteinsVitisRNA, ViralViral Proteins

Identifiers

PMID23062082
PMCPMC3568029

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.