Evidence map›Paper›PMID 23060865›Full record

ArticleFrontiers in microbiology2012

Overview of the genetic tools in the Archaea.

Haruyuki Atomi, Tadayuki Imanaka, Toshiaki Fukui

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed.

  1. Journal of bacteriology · 2026
    Review
  2. Article
  3. Hydrostatic pressure-enabled transformation inFrontiers in microbiology · 2026
    Article
  4. Review
  5. Article
  6. Review
  7. Review
  8. Teaching old dogs new tricks: genetic engineering methanogens.Applied and environmental microbiology · 2024
    Review
  9. Article
  10. Extremophiles in a changing world.Extremophiles : life under extreme conditions · 2024
    Review
  11. Article
  12. Review
  13. The cell biology of archaea.Nature microbiology · 2022
    Review
  14. Insights into the biotechnology potential ofFrontiers in microbiology · 2022
    Review
  15. An efficient transformation system for Trichoderma atroviride using the pyr4 gene as a selectable marker.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2020
    Article
  16. Open biology · 2020
    Review
  17. Review
  18. Distinct Modified Nucleosides in tRNAJournal of bacteriology · 2019
    Article
  19. Article
  20. Biotechnology of extremely thermophilic archaea.FEMS microbiology reviews · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Haruyuki AtomiDepartment of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku Kyoto, Japan ; JST, CREST, Sanbancho, Chiyoda-ku Tokyo, Japan.
Tadayuki Imanaka
Toshiaki Fukui

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This section provides an overview of the genetic systems developed in the Archaea. Genetic manipulation is possible in many members of the halophiles, methanogens, Sulfolobus, and Thermococcales. We describe the selection/counterselection principles utilized in each of these groups, which consist of antibiotics and their resistance markers, and auxotrophic host strains and complementary markers. The latter strategy utilizes techniques similar to those developed in yeast. However, Archaea are resistant to many of the antibiotics routinely used for selection in the Bacteria, and a number of strategies specific to the Archaea have been developed. In addition, examples utilizing the genetic systems developed for each group will be briefly described.

Indexed as

Archaeagene disruptiongeneticshalophilesmethanogensshuttle vectorsSulfolobusThermococcales

Identifiers

PMID23060865
PMCPMC3462420

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.