Evidence map›Paper›PMID 23056221›Full record

ArticlePloS one2012

Crystal structure of ATV(ORF273), a new fold for a thermo- and acido-stable protein from the Acidianus two-tailed virus.

Catarina Felisberto-Rodrigues, Stéphanie Blangy, Adeline Goulet, Gisle Vestergaard, Christian Cambillau, Roger A Garrett, Miguel Ortiz-Lombardía

Abstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. ICTV Virus Taxonomy Profile: Bicaudaviridae.The Journal of general virology · 2018
    Article
  2. Review
  3. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Catarina Felisberto-RodriguesCNRS, Aix-Marseille Université, AFMB, UMR 7257, Campus de Luminy, Marseille, France.
Stéphanie Blangy
Adeline Goulet
Gisle Vestergaard
Christian Cambillau
Roger A Garrett
Miguel Ortiz-Lombardía

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Acidianus two-tailed virus (ATV) infects crenarchaea of the genus Acidianus living in terrestrial thermal springs at extremely high temperatures and low pH. ATV is a member of the Bicaudaviridae virus family and undergoes extra-cellular development of two tails, a process that is unique in the viral world. To understand this intriguing phenomenon, we have undertaken structural studies of ATV virion proteins and here we present the crystal structure of one of these proteins, ATV(ORF273). ATV(ORF273) forms tetramers in solution and a molecular envelope is provided for the tetramer, computed from small-angle X-ray scattering (SAXS) data. The crystal structure has properties typical of hyperthermostable proteins, including a relatively high number of salt bridges. However, the protein also exhibits flexible loops and surface pockets. Remarkably, ATV(ORF273) displays a new α + β protein fold, consistent with the absence of homologues of this protein in public sequence databases.

Indexed as

AcidianusCircular DichroismCrystallography, X-RayDNA VirusesHot TemperatureHydrogen-Ion ConcentrationModels, MolecularProtein MultimerizationProtein StabilityProtein Structure, QuaternaryProtein Structure, SecondaryScattering, Small AngleSolutionsViral Structural ProteinsX-Ray DiffractionSolutionsViral Structural Proteins

Identifiers

PMID23056221
PMCPMC3466262

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.