Evidence map›Paper›PMID 23056190›Full record

ArticlePloS one2012

A comprehensive strategy to discover inhibitors of the translesion synthesis DNA polymerase κ.

Kinrin Yamanaka, Dorjbal Dorjsuren, Robert L Eoff, Martin Egli, David J Maloney, Ajit Jadhav, Anton Simeonov, R Stephen Lloyd

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Review
  6. Review
  7. Review
  8. Article
  9. Review
  10. Mammalian DNA Polymerase Kappa Activity and Specificity.Molecules (Basel, Switzerland) · 2019
    Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Review
  17. Cell-free Xenopus egg extracts for studying DNA damage response pathways.The International journal of developmental biology · 2016
    Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Kinrin YamanakaDepartment of Physiology and Pharmacology, Oregon Health & Science University, Portland, Oregon, United States of America.
Dorjbal Dorjsuren
Robert L Eoff
Martin Egli
David J Maloney
Ajit Jadhav
Anton Simeonov
R Stephen Lloyd
National Institutes of Health · USOregon Health & Science University · USUniversity of Arkansas for Medical Sciences · USVanderbilt University · US

Funding

NIH Chemical Genomics CenterZIBTR000004 · NCATS · NATIONAL CENTER FOR ADVANCING TRANSLATIONAL SCIENCES · PI MCKEW, JOHN · 2012 to 2014
$52.3M
Synthetic Approaches to Carcinogen-Linked OligonucleotidesP01CA160032 · NCI · VANDERBILT UNIVERSITY · PI STONE, MICHAEL P · 2012 to 2022
$14.0M
SYNTHETIC APPROACHES TO PAH-ADDUCTED NUCLEOTIDESP01ES005355 · NIEHS · VANDERBILT UNIVERSITY · PI LLOYD, STEPHEN CARROLL · 1991 to 2010
$13.4M
Program in Molecular and Cellular BiosciencesT32GM071338 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI MASLEN, CHERYL L · 2005 to 2020
$3.5M
Cellular Responses to DNA-Protein CrosslinksR01CA106858 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI LLOYD, R. STEPHEN, MCCULLOUGH, AMANDA K · 2004 to 2016
$3.2M
Coordinating Translesion DNA Synthesis Opposite Damaged DNAR00GM084460 · NIGMS · UNIV OF ARKANSAS FOR MED SCIS · PI EOFF, ROBERT L · 2011 to 2013
$730k
Inhibitors of DNA polymerase kappaR03MH094179 · NIMH · OREGON HEALTH & SCIENCE UNIVERSITY · PI LLOYD, R. STEPHEN · 2011 to 2012
$77k
NCI NIH HHS CA106858NCI NIH HHS P01 CA160032NCI NIH HHS R01 CA106858NIEHS NIH HHS ES05355NIEHS NIH HHS P01 ES005355NIGMS NIH HHS R00 GM 084460NIGMS NIH HHS R00 GM084460NIGMS NIH HHS T32 GM071338NIMH NIH HHS R03 MH 094179NIMH NIH HHS R03 MH094179
6 · The paper itself

Abstract

Human DNA polymerase kappa (pol κ) is a translesion synthesis (TLS) polymerase that catalyzes TLS past various minor groove lesions including N(2)-dG linked acrolein- and polycyclic aromatic hydrocarbon-derived adducts, as well as N(2)-dG DNA-DNA interstrand cross-links introduced by the chemotherapeutic agent mitomycin C. It also processes ultraviolet light-induced DNA lesions. Since pol κ TLS activity can reduce the cellular toxicity of chemotherapeutic agents and since gliomas overexpress pol κ, small molecule library screens targeting pol κ were conducted to initiate the first step in the development of new adjunct cancer therapeutics. A high-throughput, fluorescence-based DNA strand displacement assay was utilized to screen ∼16,000 bioactive compounds, and the 60 top hits were validated by primer extension assays using non-damaged DNAs. Candesartan cilexetil, manoalide, and MK-886 were selected as proof-of-principle compounds and further characterized for their specificity toward pol κ by primer extension assays using DNAs containing a site-specific acrolein-derived, ring-opened reduced form of γ-HOPdG. Furthermore, candesartan cilexetil could enhance ultraviolet light-induced cytotoxicity in xeroderma pigmentosum variant cells, suggesting its inhibitory effect against intracellular pol κ. In summary, this investigation represents the first high-throughput screening designed to identify inhibitors of pol κ, with the characterization of biochemical and biologically relevant endpoints as a consequence of pol κ inhibition. These approaches lay the foundation for the future discovery of compounds that can be applied to combination chemotherapy.

Indexed as

DNA DamageNucleic Acid Synthesis InhibitorsAcroleinBenzimidazolesBiphenyl CompoundsCell Line, TransformedCell SurvivalChlorobenzenesDeoxyguanosineDNADNA AdductsDNA-Directed DNA PolymeraseDNA RepairDose-Response Relationship, DrugDrug Evaluation, PreclinicalEnzyme InhibitorsAcroleinalpha-hydroxypropanodeoxyguanosineBenzimidazolesBiphenyl Compoundscandesartan cilexetilChlorobenzenesDeoxyguanosineDNADNA AdductsDNA-Directed DNA PolymeraseEnzyme InhibitorsIndolesmanoalideMK-886Nucleic Acid Synthesis InhibitorsPOLK protein, humanSmall Molecule LibrariesTerpenesTetrazolesY-Family DNA Polymerases

Identifiers

PMID23056190
PMCPMC3466269
OpenAlexW2139146509

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.