Evidence map›Paper›PMID 23055509›Full record

ArticleThe Journal of neuroscience : the official journal of the Society for Neuroscience2012

Layer-specific CREB target gene induction in human neocortical epilepsy.

Thomas L Beaumont, Bin Yao, Aashit Shah, Gregory Kapatos, Jeffrey A Loeb

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of neuroscience : the official journal of the Society for Neuroscience, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 102 citations in OpenAlex.

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  19. Focal cortical dysplasia type 1.Brain pathology (Zurich, Switzerland) · 2021
    Review
  20. Article

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Thomas L BeaumontCenter for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, Michigan 48201, USA.
Bin Yao
Aashit Shah
Gregory Kapatos
Jeffrey A Loeb
Wayne State University · US

Funding

Activity-Dependent Gene Expression in Human EpilepsyR01NS045207 · NINDS · WAYNE STATE UNIVERSITY · PI LOEB, JEFFREY A · 2003 to 2010
$2.1M
Electrical, Molecular and Clinical Correlates of Human Interictal SpikingR01NS058802 · NINDS · WAYNE STATE UNIVERSITY · PI LOEB, JEFFREY A · 2008 to 2012
$1.6M
Activity-Dependent Gene Expression in EpileptogenesisF30NS049776 · NINDS · WAYNE STATE UNIVERSITY · PI BEAUMONT, THOMAS L · 2005 to 2009
$165k
NINDS NIH HHS F30 NS049776NINDS NIH HHS F30NS049776NINDS NIH HHS R01 NS045207NINDS NIH HHS R01NS045207NINDS NIH HHS R01 NS058802NINDS NIH HHS R01NS058802
6 · The paper itself

Abstract

Epilepsy is a disorder of recurrent seizures that affects 1% of the population. To understand why some areas of cerebral cortex produce seizures and others do not, we identified differentially expressed genes in human epileptic neocortex compared with nearby regions that did not produce seizures. The transcriptome that emerged strongly implicates MAPK signaling and CREB-dependent transcription, with 74% of differentially expressed genes containing a cAMP response element (CRE) in their proximal promoter, more than half of which are conserved. Despite the absence of recent seizures in these patients, epileptic brain regions prone to seizures showed persistent activation of ERK and CREB. Persistent CREB activation was directly linked to CREB-dependent gene transcription by chromatin immunoprecipitation that showed phosphorylated CREB constitutively associated with the proximal promoters of many of the induced target genes involved in neuronal signaling, excitability, and synaptic plasticity. A distinct spatial pattern of ERK activation was seen in superficial axodendritic processes of epileptic neocortex that colocalized with both CREB phosphorylation and CREB target gene induction in well demarcated populations of layer 2/3 neurons. These same neuronal lamina showed a marked increase in synaptic density. The findings generated in this study generate a robust and spatially restricted pattern of epileptic biomarkers and associated synaptic changes that could lead to new mechanistic insights and potential therapeutic targets for human epilepsy.

Indexed as

Gene Expression RegulationGene TargetingAdolescentAdultChildChild, PreschoolCyclic AMP Response Element-Binding ProteinEpilepsyFemaleHumansMaleMiddle AgedNeocortexReaction TimeTranscription, GeneticCREB1 protein, humanCyclic AMP Response Element-Binding Protein

Identifiers

PMID23055509
PMCPMC3478758
OpenAlexW2049069182

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.