Evidence map›Paper›PMID 23055202›Full record

ArticleEnvironmental and molecular mutagenesis2013

Polymorphisms in pattern-recognition genes in the innate immunity system and risk of non-Hodgkin lymphoma.

Wei Hu, Bryan A Bassig, Jun Xu, Tongzhang Zheng, Yawei Zhang, Sonja I Berndt, Theodore R Holford, H Dean Hosgood, Brian Leaderer, Meredith Yeager and 7 more

Open access · greenAbstract read
In one paragraph

Article in Environmental and molecular mutagenesis, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 20 citations in OpenAlex.

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  11. Single-nucleotide polymorphisms in genes encoding for CC chemokines were not associated with the risk of non-Hodgkin lymphoma.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 2 countries.

Wei HuDivision of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, DHHS, Bethesda, Maryland 20892-7240, USA. wei.hu@nih.gov
Bryan A Bassig
Jun Xu
Tongzhang Zheng
Yawei Zhang
Sonja I Berndt
Theodore R Holford
H Dean Hosgood
Brian Leaderer
Meredith Yeager
Idan Menashe
Peter Boyle
Kaiyong Zou
Yong Zhu
Stephen Chanock
Qing Lan
Nathaniel Rothman
Yale University · USNational Cancer Institute · USUnited States Department of Health and Human Services · USDivision of Cancer Epidemiology and GeneticsCentre International de Recherche sur le Cancer · FR

Funding

Studies of Occupational CancerZIACP010120 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI LAN, QING · 2009 to 2025
$34.4M
STUDIES ON OCCUPATIONAL CANCER--EXPOSURES OTHER THAN PESTICIDESZ01CP010120 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI HAYES, RICHARD S · 1996 to 2008
$9.0M
Intramural NIH HHS Z01 CP010120
6 · The paper itself

Abstract

The pattern-recognition pathway plays an important role in infection recognition and immune responses, and previous studies have suggested an association between genetic variation in innate immunity genes and non-Hodgkin lymphoma (NHL). We evaluated NHL risk associated with genetic variation in pattern-recognition genes using data from a case-control study of NHL conducted in Connecticut women. Single nucleotide polymorphisms (SNPs) in 27 pattern-recognition genes were genotyped in 432 Caucasian incident NHL cases and 494 frequency-matched controls. Unconditional logistic regression was used to compute odds ratios (ORs) for NHL and common NHL subtypes in relation to individual SNPs and haplotypes. A gene-based analysis that adjusted for the number of tagSNPs genotyped in each gene showed a significant association with overall NHL for the MBP gene (P = 0.028), with the diffuse large B-cell lymphoma (DLBCL) subtype for the MASP2 gene (P = 0.011), and with the follicular lymphoma (FL) subtype for DEFB126 (P = 0.041). A SNP-based analysis showed that MBP rs8094402 was associated with decreased risks of overall NHL (allele risk OR = 0.72, P-trend = 0.0018), DLBCL (allele risk OR = 0.72, P-trend = 0.036), and FL (allele risk OR = 0.67, P-trend = 0.021), while MASP2 rs12711521 was associated with a decreased risk of DLBCL (allele risk OR = 0.57, P-trend = 0.0042). We also observed an increased risk of FL for DEFB126 rs6054706 (allele risk OR = 1.39, P-trend = 0.033). Our results suggest that genetic variation in pattern-recognition genes is associated with the risk of NHL or specific NHL subtypes, but these preliminary findings require replication in larger studies.

Indexed as

Polymorphism, Single NucleotideAdultAgedAged, 80 and overbeta-DefensinsCase-Control StudiesConnecticutFemaleGenetic Predisposition to DiseaseHaplotypesHumansImmunity, InnateLogistic ModelsLymphoma, FollicularLymphoma, Large B-Cell, DiffuseLymphoma, Non-Hodgkinbeta-DefensinsDEFB126 protein, humanMannose-Binding Protein-Associated Serine ProteasesMASP2 protein, humanMBP protein, humanMyelin Basic ProteinReceptors, Pattern Recognition

Identifiers

PMID23055202
PMCPMC6800161
OpenAlexW2084775404

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.