Evidence map›Paper›PMID 23052021›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2013

Positional cloning of a candidate gene for resistance to the sunflower downy mildew, Plasmopara halstedii race 300.

Jérôme Franchel, Mohamed Fouad Bouzidi, Gisèle Bronner, Felicity Vear, Paul Nicolas, Said Mouzeyar

Abstract read
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In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. High-Density Mapping and Candidate Gene Analysis ofInternational journal of molecular sciences · 2020
    Article
  2. Article
  3. High-throughput genotyping-by-sequencing facilitates molecular tagging of a novel rust resistance gene, RTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018
    Article
  4. Genotyping-by-sequencing targeting of a novel downy mildew resistance gene PlTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jérôme FranchelClermont Université, Université Blaise Pascal, UMR INRA-UBP 1095 GDEC, BP 10448, 63000 Clermont-Ferrand, France.
Mohamed Fouad Bouzidi
Gisèle Bronner
Felicity Vear
Paul Nicolas
Said Mouzeyar

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The resistance of sunflower to Plasmopara halstedii is conferred by major resistance genes denoted Pl. Previous genetic studies indicated that the majority of these genes are clustered on linkage groups 8 and 13. The Pl6 locus is one of the main clusters to have been identified, and confers resistance to several P. halstedii races. In this study, a map-based cloning strategy was implemented using a large segregating F2 population to establish a fine physical map of this cluster. A marker derived from a bacterial artificial chromosome (BAC) clone was found to be very tightly linked to the gene conferring resistance to race 300, and the corresponding BAC clone was sequenced and annotated. It contains several putative genes including three toll-interleukin receptor-nucleotide binding site-leucine rich repeats (TIR-NBS-LRR) genes. However, only one TIR-NBS-LRR appeared to be expressed, and thus constitutes a candidate gene for resistance to P. halstedii race 300.

Indexed as

Quantitative Trait LociAmino Acid SequenceChromosome MappingChromosomes, PlantCloning, MolecularCrosses, GeneticDisease ResistanceDNA, PlantGenes, PlantHelianthusImmunity, InnateMolecular Sequence DataOomycetesPlant DiseasesRNA, PlantSequence Homology, Amino AcidDNA, PlantRNA, Plant

Identifiers

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.